CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0128900

Gene name
Homology with Arabidopsis Similar to At5g63480: unknown protein (HF=8e+0)

Module size 8 genes

NF 0.50

%ile 65.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 78.0 0.97 Os08g0128900 9636.m00264 - - 8e+0 At5g63480 unknown protein O.I. H.G. S.X.
0.67 87.2 0.97 Os11g0269000 9639.m01518 - - 7e-21 At3g48870 HSP93-III O.I. H.G. S.X.
0.55 73.7 0.98 Os10g0479800 AK107572.1 - Protein of unknown function DUF1336 domaincontaining protein 6e-25 At2g28320 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein O.I. H.G. S.X.
0.53 71.3 0.98 Os01g0705700 NM_191645.1 - Transcription factor ICE1 (Inducer of CBFexpression 1) (Basic helix- loop-helix protein 116)(bHLH116) (AtbHLH116) 8e-20 At4g16430 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.50 68.0 0.98 Os02g0129200 9630.m00270 - - 9e+0 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) O.I. H.G. S.X.
0.48 63.7 0.98 Os07g0132200 NM_186234.1 - - 9e-1 At5g51170 unknown protein O.I. H.G. S.X.
0.34 40.0 0.98 Os11g0125100 9639.m00225 - - 1e-2 At5g42780 AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27) O.I. H.G. S.X.
0.29 31.1 0.98 Os02g0110100 9630.m00098 - - 5e-1 At4g34590 GBF6 (G-BOX BINDING FACTOR 6) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.1 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.2 98.4 GSM159199 Inflorescence (P4, 10 - 15 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
13.2 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM159200 Inflorescence (P4, 10 - 15 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
11.3 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM159198 Inflorescence (P4, 10 - 15 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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