CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0127100

Gene name
Homology with Arabidopsis Similar to At5g40780: LHT1 (HF=3e-19)

Module size 7 genes

NF 0.55

%ile 74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.91 Os08g0127100 AK065217.1 - Lysine and histidine specific transporter 3e-19 At5g40780 LHT1 O.I. H.G. S.X.
0.77 93.1 0.94 Os04g0503600 AK068552.1 - Protein kinase domain containing protein 2e+0 At5g58940 CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1) O.I. H.G. S.X.
0.60 79.7 0.94 Os11g0703400 AB117996.1 - Snf7 family protein 2e-19 At2g06530 VPS2.1 O.I. H.G. S.X.
0.53 71.3 0.94 Os04g0451900 9632.m03567 - Protein phosphatase 2C-like domain containingprotein 6e-11 At1g22280 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.50 68.0 0.92 Os02g0475300 AK120516.1 - Membrane attack complexcomponent/perforin/complement C9 family protein 5e+0 At5g08590 SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1) O.I. H.G. S.X.
0.44 58.1 0.95 Os02g0173800 AK069063.1 - Eukaryotic protein of unknown function DUF284family protein 2e-8 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein O.I. H.G. S.X.
0.22 19.4 0.94 Os01g0959800 CF277981 - Phosphatidylserine decarboxylase 1e-9 At4g25970 PSD3 (phosphatidylserine decarboxylase 3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.3 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.8 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.041 1 GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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