CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0126700

Gene name
Homology with Arabidopsis Similar to At3g52980: RNA recognition motif (RRM)-containing protein (HF=4e-1)

Module size 6 genes

NF 0.16

%ile 13.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.87 Os08g0126700 AK111805.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 4e-1 At3g52980 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.19 15.1 0.93 Os02g0326700 AK064977.1 - Rhomboid-like protein family protein 5e-5 At5g38510 rhomboid family protein O.I. H.G. S.X.
0.17 12.6 0.90 Os03g0782500 AK105637.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 1e-15 At1g09530 PIF3 (PHYTOCHROME INTERACTING FACTOR 3) O.I. H.G. S.X.
0.15 10.3 0.91 Os01g0279100 AK059435.1 - Basic leucine zipper transcription factor CAT103(Fragment) 1e-114 At3g56940 CRD1 (COPPER RESPONSE DEFECT 1) O.I. H.G. S.X.
0.08 4.2 0.95 Os10g0181600 AK059127.1 - SAM (and some other nucleotide) binding motifdomain containing protein 3e+0 At2g24060 translation initiation factor 3 (IF-3) family protein O.I. H.G. S.X.
0.08 4.2 0.93 Os11g0127800 AK059969.1 - Forkhead-associated domain containing protein 1e-1 At4g38092 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.0 99.3 GSM159206 Inflorescence (P6, 22 - 30 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
20.5 99.1 GSM159204 Inflorescence (P6, 22 - 30 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
17.7 98.9 GSM159205 Inflorescence (P6, 22 - 30 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
10.5 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
10.0 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage