Co-expression analysis

Gene ID	Os08g0114300
Gene name
Homology with Arabidopsis	Similar to At2g46750: FAD-binding domain-containing protein (HF=7e-2)
Module size	6 genes
NF	0.08
%ile	5.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	82.7	0.83	Os08g0114300	AK105866.1	-	Plant-specific FAD-dependent oxidoreductase familyprotein	7e-2	At2g46750	FAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	0.86	Os06g0647400	AK068457.1	-	Lysosomal Pro-X carboxypeptidase	1e-15	At2g24280	serine carboxypeptidase S28 family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	4.2	0.83	Os01g0207400	AK109337.2	-	Hypothetical protein	3e-1	At4g36020	CSDP1 (cold shock domain protein 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	2.5	0.85	Os07g0656800	AK099536.1	-	Conserved hypothetical protein	3e+0	At5g66470	GTP binding / RNA binding	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2.0	0.89	Os06g0238300	AK107758.1	-	FMN-binding split barrel domain containing protein	2e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1.4	0.84	Os08g0509200	AK067001.1	-	Amygdalin hydrolase isoform AH I precursor (EC3.2.1.117)	1e+0	At2g03020	heat shock protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
40.8	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
24.4	99.4	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.3	98.3	GSM409430	9311_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
10.6	98.1	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.3	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3	97.7	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1	97.7	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7	97.6	GSM409431	9311_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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