CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0111300

Gene name
Homology with Arabidopsis Similar to At5g17340: unknown protein (HF=2e-1)

Module size 22 genes

NF 0.47

%ile 60.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.74 91.4 0.84 Os08g0111300 AK110905.1 - Transferase family protein 2e-1 At5g17340 unknown protein O.I. H.G. S.X.
0.67 87.2 0.85 Os08g0563200 AK110263.1 - Protein of unknown function DUF296 domaincontaining protein 2e-1 At1g76500 SOB3 (SUPPRESSOR OF PHYB-4#3) O.I. H.G. S.X.
0.61 81.2 0.88 Os11g0152700 AK102690.1 - Transcription factor HBP-1b(C38) (Fragment) 3e-1 At1g77920 bZIP family transcription factor O.I. H.G. S.X.
0.57 77.0 0.90 Os10g0390600 AK107029.1 - 1-aminocyclopropane-1-carboxylate synthase familyprotein 4e-7 At1g72330 ALAAT2 (ALANINE AMINOTRANSFERASE 2) O.I. H.G. S.X.
0.57 77.0 0.87 Os05g0278500 AK067851.1 - Transferase family protein 2e-1 At1g06980 unknown protein O.I. H.G. S.X.
0.55 73.7 0.88 Os12g0639200 AK122160.1 - AAA ATPase, central region domain containingprotein 4e-3 At4g05380 AAA-type ATPase family protein O.I. H.G. S.X.
0.54 71.9 0.86 Os11g0700500 AK111626.1 - Myb, DNA-binding domain containing protein 1e-8 At5g59780 MYB59 (MYB DOMAIN PROTEIN 59) O.I. H.G. S.X.
0.53 71.3 0.86 Os01g0297200 AK109883.1 - AAA ATPase, central region domain containingprotein 6e-5 At4g25835 AAA-type ATPase family protein O.I. H.G. S.X.
0.52 69.6 0.87 Os05g0114700 AK111634.1 - Myb, DNA-binding domain containing protein 7e-5 At4g38620 MYB4 O.I. H.G. S.X.
0.48 63.7 0.88 Os02g0579600 AY177696.1 - Transcription factor MADS27 7e-19 At3g57230 AGL16 (AGAMOUS-LIKE 16) O.I. H.G. S.X.
0.46 60.9 0.90 Os01g0291500 AK070443.1 - Transferase family protein 9e-4 At3g62160 transferase family protein O.I. H.G. S.X.
0.46 60.9 0.85 Os11g0232100 AK105669.1 - Protein kinase domain containing protein 7e-3 At1g72180 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.44 58.1 0.88 Os12g0183200 9640.m00762 - 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)(3'(2'),5- bisphosphonucleoside 3'(2')-phosphohydrolase)(DPNPase) 3e-2 At5g63990 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative O.I. H.G. S.X.
0.44 58.1 0.87 Os08g0176900 AK107028.1 - - 1e+0 At5g17080 cathepsin-related O.I. H.G. S.X.
0.41 52.4 0.89 Os02g0745100 AK069842.1 - NOD26-like membrane integral protein ZmNIP2-1 2e-1 At4g17340 TIP2 O.I. H.G. S.X.
0.37 45.0 0.87 Os01g0284500 AF032974.1 - Nectarin 1 precursor (EC 1.15.1.1) (Superoxidedismutase [Mn]) 7e-3 At1g02335 GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.) O.I. H.G. S.X.
0.35 41.7 0.88 Os02g0108800 AK099951.1 - Conserved hypothetical protein 5e-2 At1g04555 unknown protein O.I. H.G. S.X.
0.35 41.7 0.89 Os07g0421300 AK121014.1 - Glycoside hydrolase, family 31 protein 7e-15 At3g23640 HGL1 (heteroglycan glucosidase 1) O.I. H.G. S.X.
0.34 40.0 0.87 Os04g0452700 AK108820.1 - Monosaccharide transporter 1 4e-6 At1g34580 monosaccharide transporter, putative O.I. H.G. S.X.
0.34 40.0 0.87 Os01g0824800 AK066200.1 - Conserved hypothetical protein 2e-1 At1g71910 unknown protein O.I. H.G. S.X.
0.33 38.8 0.88 Os06g0692100 AK110293.1 - Protein kinase domain containing protein 1e-1 At1g48480 RKL1 O.I. H.G. S.X.
0.30 32.7 0.87 Os08g0159700 AK109080.1 - Protein of unknown function DUF296 domaincontaining protein 6e-1 At2g41225 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.74	91.4	0.84	Os08g0111300	AK110905.1	-	Transferase family protein	2e-1	At5g17340	unknown protein	O.I.	H.G.	S.X.
0.67	87.2	0.85	Os08g0563200	AK110263.1	-	Protein of unknown function DUF296 domaincontaining protein	2e-1	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	O.I.	H.G.	S.X.
0.61	81.2	0.88	Os11g0152700	AK102690.1	-	Transcription factor HBP-1b(C38) (Fragment)	3e-1	At1g77920	bZIP family transcription factor	O.I.	H.G.	S.X.
0.57	77.0	0.90	Os10g0390600	AK107029.1	-	1-aminocyclopropane-1-carboxylate synthase familyprotein	4e-7	At1g72330	ALAAT2 (ALANINE AMINOTRANSFERASE 2)	O.I.	H.G.	S.X.
0.57	77.0	0.87	Os05g0278500	AK067851.1	-	Transferase family protein	2e-1	At1g06980	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.88	Os12g0639200	AK122160.1	-	AAA ATPase, central region domain containingprotein	4e-3	At4g05380	AAA-type ATPase family protein	O.I.	H.G.	S.X.
0.54	71.9	0.86	Os11g0700500	AK111626.1	-	Myb, DNA-binding domain containing protein	1e-8	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	O.I.	H.G.	S.X.
0.53	71.3	0.86	Os01g0297200	AK109883.1	-	AAA ATPase, central region domain containingprotein	6e-5	At4g25835	AAA-type ATPase family protein	O.I.	H.G.	S.X.
0.52	69.6	0.87	Os05g0114700	AK111634.1	-	Myb, DNA-binding domain containing protein	7e-5	At4g38620	MYB4	O.I.	H.G.	S.X.
0.48	63.7	0.88	Os02g0579600	AY177696.1	-	Transcription factor MADS27	7e-19	At3g57230	AGL16 (AGAMOUS-LIKE 16)	O.I.	H.G.	S.X.
0.46	60.9	0.90	Os01g0291500	AK070443.1	-	Transferase family protein	9e-4	At3g62160	transferase family protein	O.I.	H.G.	S.X.
0.46	60.9	0.85	Os11g0232100	AK105669.1	-	Protein kinase domain containing protein	7e-3	At1g72180	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.44	58.1	0.88	Os12g0183200	9640.m00762	-	3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)(3'(2'),5- bisphosphonucleoside 3'(2')-phosphohydrolase)(DPNPase)	3e-2	At5g63990	3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative	O.I.	H.G.	S.X.
0.44	58.1	0.87	Os08g0176900	AK107028.1	-	-	1e+0	At5g17080	cathepsin-related	O.I.	H.G.	S.X.
0.41	52.4	0.89	Os02g0745100	AK069842.1	-	NOD26-like membrane integral protein ZmNIP2-1	2e-1	At4g17340	TIP2	O.I.	H.G.	S.X.
0.37	45.0	0.87	Os01g0284500	AF032974.1	-	Nectarin 1 precursor (EC 1.15.1.1) (Superoxidedismutase [Mn])	7e-3	At1g02335	GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)	O.I.	H.G.	S.X.
0.35	41.7	0.88	Os02g0108800	AK099951.1	-	Conserved hypothetical protein	5e-2	At1g04555	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.89	Os07g0421300	AK121014.1	-	Glycoside hydrolase, family 31 protein	7e-15	At3g23640	HGL1 (heteroglycan glucosidase 1)	O.I.	H.G.	S.X.
0.34	40.0	0.87	Os04g0452700	AK108820.1	-	Monosaccharide transporter 1	4e-6	At1g34580	monosaccharide transporter, putative	O.I.	H.G.	S.X.
0.34	40.0	0.87	Os01g0824800	AK066200.1	-	Conserved hypothetical protein	2e-1	At1g71910	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.88	Os06g0692100	AK110293.1	-	Protein kinase domain containing protein	1e-1	At1g48480	RKL1	O.I.	H.G.	S.X.
0.30	32.7	0.87	Os08g0159700	AK109080.1	-	Protein of unknown function DUF296 domaincontaining protein	6e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.0 99.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.6 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.3 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.4 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
21.0	99.2	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.6	98.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.3	98.4	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.4	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.032 1 GO:0008643 The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.032	1	GO:0008643	The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os08g0111300
Gene name
Homology with Arabidopsis	Similar to At5g17340: unknown protein (HF=2e-1)
Module size	22 genes
NF	0.47
%ile	60.9

Co-expression analysis

Gene ID Os08g0111300 Gene name Homology with ArabidopsisSimilar to At5g17340: unknown protein (HF=2e-1) Module size 22 genes NF 0.47 %ile 60.9

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0321GO:0008643The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os08g0111300

Gene name
Homology with Arabidopsis Similar to At5g17340: unknown protein (HF=2e-1)

Module size 22 genes

NF 0.47

%ile 60.9

SF Genes GO ID Process Name Link to AmiGO
0.032 1 GO:0008643 The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays