Co-expression analysis

Gene ID Os08g0109200
Gene name
Homology with ArabidopsisSimilar to At5g63620: oxidoreductase, zinc-binding dehydrogenase family protein (HF=6e-11)
Module size 8 genes
NF 0.29
%ile 30.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.70.90Os08g0109200AK101912.1-Zinc-containing alcohol dehydrogenase superfamilyprotein6e-11At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.5777.00.91Os06g0221200AK072559.1-Annexin p337e-4At2g23320WRKY15O.I.H.G.S.X.
0.4051.10.93Os02g0244700AF271995.1-Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31)(PEPCase 1) (CP21)5e-53At3g14940ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)O.I.H.G.S.X.
0.3644.00.91Os04g0434800AB114855.1-Stromal ascorbate peroxidase9e-19At1g77490TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)O.I.H.G.S.X.
0.3644.00.95Os06g0142700AK071423.1-Cytochrome c oxidase subunit Vb2e-15At1g80230cytochrome c oxidase family proteinO.I.H.G.S.X.
0.1915.10.91Os09g0293400AK059627.1-Ubiquitin-conjugating enzyme E21e-10At5g56150UBC30 (ubiquitin-conjugating enzyme 30)O.I.H.G.S.X.
0.1712.60.92Os04g0464200AK103582.1-Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH)2e-17At3g48170ALDH10A9O.I.H.G.S.X.
0.149.30.93Os07g0647500NM_185919.1-Conserved hypothetical protein3e+0At5g07950unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.597.9GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.097.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.997.6GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.397.5GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.397.5GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.997.3GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.597.2GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.397.2GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.297.1GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0671GO:0006099A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.Link to AmiGO
0.0441GO:0016579The removal of one or more ubiquitin moieties from a protein.Link to AmiGO
0.0331GO:0006464The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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