CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0104700

Gene name
Homology with Arabidopsis Similar to At4g33240: 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding (HF=7e-4)

Module size 6 genes

NF 0.13

%ile 10.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.93 Os08g0104700 AK120989.1 - Phosphatidylinositol-4-phosphate 5-kinase familyprotein 7e-4 At4g33240 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding O.I. H.G. S.X.
0.36 44.0 0.93 Os04g0615100 CB661558 - Lecithin:cholesterol acyltransferase familyprotein 3e-4 At4g19860 lecithin:cholesterol acyltransferase family protein / LACT family protein O.I. H.G. S.X.
0.21 17.9 0.93 Os02g0173800 AK069063.1 - Eukaryotic protein of unknown function DUF284family protein 2e-8 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein O.I. H.G. S.X.
0.14 9.3 0.93 Os03g0248000 AK070612.1 - Autophagy protein Apg9 family protein 3e-5 At2g31260 APG9 (autophagy 9) O.I. H.G. S.X.
0.07 3.7 0.93 Os06g0102700 AK071080.1 - Arm repeat-containing protein 1e-6 At3g46510 PUB13 (PLANT U-BOX 13) O.I. H.G. S.X.
0.06 3.0 0.93 Os03g0318600 AB051294.1 - Transcription factor HBP-1b(c38) 4e-15 At5g06950 AHBP-1B O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.3 99.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.7 98.0 GSM431928 Root- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.3 97.9 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
8.1 97.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.2 97.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
6.2 97.1 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
5.9 97.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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