CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0696000

Gene name
Homology with Arabidopsis Similar to At5g25970: unknown protein (HF=3e-1)

Module size 6 genes

NF 0.19

%ile 16.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.91 Os07g0696000 AK108592.1 - Hypothetical protein 3e-1 At5g25970 unknown protein O.I. H.G. S.X.
0.57 77.0 0.93 Os11g0633500 AK066215.1 - NBS-LRR disease resistance protein homologue(Fragment) 2e+0 At2g16070 PDV2 (PLASTID DIVISION2) O.I. H.G. S.X.
0.24 22.4 0.94 Os12g0405400 AK066879.1 - Conserved hypothetical protein 2e-2 At2g30560 glycine-rich protein O.I. H.G. S.X.
0.12 7.2 0.92 Os05g0238400 AK073471.1 - Conserved hypothetical protein 4e-2 At2g30560 glycine-rich protein O.I. H.G. S.X.
0.10 5.7 0.93 Os06g0186700 AK073039.1 - Biopterin transport-related protein BT1 familyprotein 7e-2 At1g79710 integral membrane transporter family protein O.I. H.G. S.X.
0.10 5.7 0.93 Os04g0302300 AK072639.1 - Conserved hypothetical protein 5e-1 At4g04500 protein kinase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.5 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
32.8 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.7 99.1 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.3 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, rbaal33f13_at, orthologous to the query gene, Os07g0696000

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 rbaal33f13_at At5g25970 - - 5e+0 At3g22190 IQD5 (IQ-domain 5) O.I. H.G. S.X.
0.50 66.9 Contig2249_at At5g25970 - - 2e+0 At1g17170 ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24) O.I. H.G. S.X.
0.26 30.4 HVSMEg0011O17r2_s_at At5g25970 - - 1e+1 At5g42223 - O.I. H.G. S.X.
0.17 16.9 Contig15259_at At5g25970 - - 1e-1 At5g66040 STR16 (SULFURTRANSFERASE PROTEIN 16) O.I. H.G. S.X.
0.08 6.5 Contig21005_at At5g25970 - - 5e+0 At4g22570 APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3) O.I. H.G. S.X.
0.04 3.4 Contig11748_at At5g25970 - - 2e-4 At1g38065 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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