CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0694000

Gene name
Homology with Arabidopsis Similar to At2g40116: phosphoinositide-specific phospholipase C family protein (HF=8e-8)

Module size 11 genes

NF 0.15

%ile 12.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.91 Os07g0694000 AF332874.1 - Phosphoinositide-specific phospholipase C 8e-8 At2g40116 phosphoinositide-specific phospholipase C family protein O.I. H.G. S.X.
0.40 51.1 0.94 Os02g0265900 AK064290.1 - Reticulon family protein 6e-1 At2g01560 unknown protein O.I. H.G. S.X.
0.29 31.1 0.95 Os06g0622900 AK065654.1 - RNA-binding region containing protein 1 (HSRNASEB)(ssDNA binding protein SEB4) (CLL-associated antigenKW-5). Splice isoform 2 4e-3 At1g78260 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.27 27.5 0.95 Os12g0484700 AK121352.1 - Yippee-like protein family protein 3e-5 At4g27745 - O.I. H.G. S.X.
0.15 10.3 0.94 Os03g0101100 AK120839.1 - Palmitoyl protein thioesterase family protein 6e-1 At5g47330 palmitoyl protein thioesterase family protein O.I. H.G. S.X.
0.13 8.2 0.95 Os02g0177800 AK065684.1 - Calmodulin-binding protein 6e-21 At2g18750 calmodulin-binding protein O.I. H.G. S.X.
0.13 8.2 0.93 Os07g0516500 AK061672.1 - Hypothetical protein 1e-1 At2g43760 molybdopterin biosynthesis MoaE family protein O.I. H.G. S.X.
0.11 6.5 0.93 Os02g0177900 AK060768.1 - Carbohydrate kinase, FGGY family protein 8e-22 At4g30310 ribitol kinase, putative O.I. H.G. S.X.
0.09 4.9 0.94 Os02g0777100 AK100528.1 - DENN domain containing protein 5e+0 At5g53850 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.08 4.2 0.94 Os02g0104200 AK060830.1 - Conserved hypothetical protein 9e-10 At4g25670 unknown protein O.I. H.G. S.X.
0.06 3.0 0.94 Os02g0201000 AK064792.1 - Conserved hypothetical protein 7e-2 At5g25360 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
48.8 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.3 97.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.1 96.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.1 94.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.0 94.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.0 94.6 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.9 94.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.9 94.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.9 94.5 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
2.8 94.3 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.054 1 GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
0.040 1 GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
0.027 1 GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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