CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0688800

Gene name
Homology with Arabidopsis Similar to At3g66658: ALDH22a1 (Aldehyde Dehydrogenase 22a1) (HF=4e-22)

Module size 6 genes

NF 0.63

%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.97 Os07g0688800 AK068462.1 - Aldehyde dehydrogenase domain containing protein 4e-22 At3g66658 ALDH22a1 (Aldehyde Dehydrogenase 22a1) O.I. H.G. S.X.
0.67 87.2 0.97 Os03g0288600 AK101532.1 - Muscle derived-like protein 6e-11 At5g50840 - O.I. H.G. S.X.
0.61 81.2 0.97 Os02g0179300 AK069065.1 - RAD23 protein, isoform II 9e-10 At1g16190 DNA repair protein RAD23, putative O.I. H.G. S.X.
0.55 73.7 0.97 Os01g0710000 AK111794.1 - - 8e-63 At2g19520 FVE O.I. H.G. S.X.
0.44 58.1 0.97 Os03g0347200 AY017415.1 - Initiation factor eIF-4 gamma, middle domaincontaining protein 3e-8 At2g13540 ABH1 (ABA HYPERSENSITIVE 1) O.I. H.G. S.X.
0.43 55.4 0.97 Os02g0234800 AK070679.1 - U2 snRNP-specific A' protein 1e-2 At1g09760 U2A' (U2 small nuclear ribonucleoprotein A) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.3 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.0 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.118 1 GO:0006289 A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
0.065 1 GO:0006306 The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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