CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0688400

Gene name
Homology with Arabidopsis Similar to At4g19270: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.57

%ile 77.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.36 44.0 0.98 Os07g0688400 9638.m02651 - - 2e+0 At4g19270 unknown protein O.I. H.G. S.X.
0.80 94.6 0.98 Os11g0308700 9639.m01908 - - 6e-1 At4g33350 chloroplast inner membrane import protein Tic22, putative O.I. H.G. S.X.
0.67 87.2 0.99 Os05g0255200 9633.m01478 - - 7e+0 At4g09260 unknown protein O.I. H.G. S.X.
0.61 81.2 0.98 Os01g0260300 9629.m01542 - - 1e-1 At5g05230 ubiquitin-protein ligase O.I. H.G. S.X.
0.47 62.3 0.98 Os03g0791100 9631.m05665 - - 3e+0 At5g48860 unknown protein O.I. H.G. S.X.
0.44 58.1 0.98 Os04g0348200 9632.m02648 - - 2e+0 At5g35300 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os07g0688400	9638.m02651	-	-	2e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.
0.80	94.6	0.98	Os11g0308700	9639.m01908	-	-	6e-1	At4g33350	chloroplast inner membrane import protein Tic22, putative	O.I.	H.G.	S.X.
0.67	87.2	0.99	Os05g0255200	9633.m01478	-	-	7e+0	At4g09260	unknown protein	O.I.	H.G.	S.X.
0.61	81.2	0.98	Os01g0260300	9629.m01542	-	-	1e-1	At5g05230	ubiquitin-protein ligase	O.I.	H.G.	S.X.
0.47	62.3	0.98	Os03g0791100	9631.m05665	-	-	3e+0	At5g48860	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.98	Os04g0348200	9632.m02648	-	-	2e+0	At5g35300	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.2	0.96	Os01g0772100	NM_191430.1	-	LOB domain protein 30	8e-1	At5g50090	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.97	Os12g0205900	9640.m00982	-	-	1e+0	At2g36540	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os02g0821600	9630.m05736	-	Hypothetical protein	3e-1	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	O.I.	H.G.	S.X.
0.44	58.1	0.98	Os07g0285400	9635.m01870	-	-	3e-1	At1g51430	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.98	Os10g0461300	9638.m02811	-	-	5e-1	At1g31330	PSAF (photosystem I subunit F)	O.I.	H.G.	S.X.
0.37	45.0	0.98	Os11g0239000	9639.m01244	-	-	1e+1	At1g80610	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os10g0106750	NM_194527.1	-	-	1e+1	At5g24105	AGP41 (ARABINOGALACTAN-PROTEIN 41)	O.I.	H.G.	S.X.
0.35	41.7	0.97	Os08g0113600	AK061571.1	-	-	8e-3	At5g27440	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.98	Os11g0300600	AK060497.1	-	Protein kinase domain containing protein	4e-3	At5g61660	glycine-rich protein	O.I.	H.G.	S.X.
0.34	40.0	0.97	Os10g0328600	AK109143.1	-	-	2e-2	At5g44450	methyltransferase	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os05g0384750	9633.m02922	-	-	2e+1	At5g07571	-	O.I.	H.G.	S.X.
0.32	36.3	0.97	Os08g0451500	9636.m03518	-	Conserved hypothetical protein	3e-1	At3g54680	proteophosphoglycan-related	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os11g0530050	9639.m02967	-	-	5e+0	At1g61930	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.99	Os10g0331500	AK060146.1	-	Conserved hypothetical protein	2e+0	At2g29740	UGT71C2 (UDP-GLUCOSYL TRANSFERASE 71C2)	O.I.	H.G.	S.X.
0.30	32.7	0.98	Os12g0473800	9640.m02780	-	-	2e+0	At4g32030	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.96	Os10g0160300	NM_194969.1	-	-	1e+0	At4g14276	-	O.I.	H.G.	S.X.
0.30	32.7	0.97	Os12g0481000	9640.m02858	-	Chitinase precursor (EC 3.2.1.14)	2e-1	At1g04778	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.97	Os01g0200600	AY339374.1	-	Pathogenesis-related transcriptional factor andERF domain containing protein	2e-12	At5g11590	TINY2 (TINY2)	O.I.	H.G.	S.X.
0.28	31.1	0.96	Os05g0197300	AK106389.1	-	IQ calmodulin-binding region domain containingprotein	2e-5	At2g26190	calmodulin-binding family protein	O.I.	H.G.	S.X.
0.27	27.5	0.98	Os10g0106300	9638.m00073	-	-	1e+1	At4g24050	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.25	24.1	0.98	Os03g0298200	9631.m01842	-	-	3e+0	At1g32570	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.9 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
58.3	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
26.9	99.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.5	98.5	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3	98.4	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7	98.4	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9	98.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9	98.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os07g0688400
Gene name
Homology with Arabidopsis	Similar to At4g19270: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.57
%ile	77.7

Co-expression analysis

Gene ID Os07g0688400 Gene name Homology with ArabidopsisSimilar to At4g19270: unknown protein (HF=2e+0) Module size 6 genes NF 0.57 %ile 77.7

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os07g0688400

Gene name
Homology with Arabidopsis Similar to At4g19270: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.57

%ile 77.7

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays