CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0688400

Gene name
Homology with Arabidopsis Similar to At4g19270: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.57

%ile 77.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.36 44.0 0.98 Os07g0688400 9638.m02651 - - 2e+0 At4g19270 unknown protein O.I. H.G. S.X.
0.80 94.6 0.98 Os11g0308700 9639.m01908 - - 6e-1 At4g33350 chloroplast inner membrane import protein Tic22, putative O.I. H.G. S.X.
0.67 87.2 0.99 Os05g0255200 9633.m01478 - - 7e+0 At4g09260 unknown protein O.I. H.G. S.X.
0.61 81.2 0.98 Os01g0260300 9629.m01542 - - 1e-1 At5g05230 ubiquitin-protein ligase O.I. H.G. S.X.
0.47 62.3 0.98 Os03g0791100 9631.m05665 - - 3e+0 At5g48860 unknown protein O.I. H.G. S.X.
0.44 58.1 0.98 Os04g0348200 9632.m02648 - - 2e+0 At5g35300 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.9 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.72371.1.S1_at, orthologous to the query gene, Os07g0688400

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 80.5 PtpAffx.72371.1.S1_at At4g19270 hypothetical protein - 4e-1 At1g32337 unknown protein O.I. H.G. S.X.
0.53 80.5 PtpAffx.32627.1.S1_at At4g19270 hypothetical protein - 5e-7 At5g08260 scpl35 (serine carboxypeptidase-like 35) O.I. H.G. S.X.
0.53 80.5 PtpAffx.216129.1.S1_s_at At4g19270 hypothetical protein - 2e+0 At3g44760 unknown protein O.I. H.G. S.X.
0.44 71.9 Ptp.5408.1.S1_s_at At4g19270 hypothetical protein - 5e-11 At5g67260 CYCD3 O.I. H.G. S.X.
0.42 68.6 Ptp.8036.1.S1_at At4g19270 hypothetical protein - 2e-56 At1g01950 armadillo/beta-catenin repeat family protein / kinesin motor family protein O.I. H.G. S.X.
0.38 63.7 Ptp.7732.1.S1_at At4g19270 hypothetical protein - 2e+0 At1g07660 histone H4 O.I. H.G. S.X.
0.35 59.7 Ptp.1067.1.S1_s_at At4g19270 hypothetical protein - 2e-3 At2g46210 delta-8 sphingolipid desaturase, putative O.I. H.G. S.X.
0.30 52.0 PtpAffx.203929.1.S1_at At4g19270 hypothetical protein - 6e-3 At1g67040 unknown protein O.I. H.G. S.X.
0.25 43.6 PtpAffx.22504.1.S1_at At4g19270 hypothetical protein - 5e-25 At4g34260 FUC95A O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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