CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0673700

Gene name
Homology with Arabidopsis Similar to At3g43583: unknown protein (HF=4e+0)

Module size 6 genes

NF 0.40

%ile 49.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.93 Os07g0673700 AK071934.1 - Cyclin-like F-box domain containing protein 4e+0 At3g43583 unknown protein O.I. H.G. S.X.
0.43 55.4 0.93 Os08g0478100 AK063259.1 - Protein of unknown function UPF0029 family protein 2e-4 At4g38090 unknown protein O.I. H.G. S.X.
0.40 51.1 0.94 Os03g0684000 AK105025.2 - Zn-finger, GATA type domain containing protein 1e-2 At3g21175 ZML1 (ZIM-LIKE 1) O.I. H.G. S.X.
0.40 51.1 0.94 Os12g0103000 AK068622.1 - Mitochondrial substrate carrier family protein 3e-16 At2g35800 mitochondrial substrate carrier family protein O.I. H.G. S.X.
0.31 34.5 0.93 Os04g0577500 AK065648.1 - TatD-related deoxyribonuclease family protein 2e-4 At5g17570 tatD-related deoxyribonuclease family protein O.I. H.G. S.X.
0.21 17.9 0.95 Os02g0123400 9630.m00227 - Conserved hypothetical protein 1e+0 At1g73970 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
53.1 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.5 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.8 97.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0006366 The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).

Inter-species module comparison

A co-expression module including the barley gene, HS08O16u_s_at, orthologous to the query gene, Os07g0673700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 HS08O16u_s_at At3g43583 - - 2e+1 At5g62440 - O.I. H.G. S.X.
0.91 98.1 Contig7111_at At3g43583 - - 2e-37 At1g11890 SEC22 O.I. H.G. S.X.
0.91 98.1 Contig4844_s_at At3g43583 - - 2e+0 At4g23070 ATRBL7 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 7) O.I. H.G. S.X.
0.91 98.1 HVSMEb0004L16r2_at At3g43583 - - 1e+0 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) O.I. H.G. S.X.
0.91 98.1 Contig4845_at At3g43583 - - 2e-4 At1g68140 - O.I. H.G. S.X.
0.83 94.0 Contig3822_at At3g43583 - - 6e-43 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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