Co-expression analysis

Gene ID Os07g0671400
Gene name
Homology with ArabidopsisSimilar to At3g18740: 60S ribosomal protein L30 (RPL30C) (HF=6e-1)
Module size 16 genes
NF 0.43
%ile 54.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8696.40.87Os07g0671400AK067933.1-Heavy metal transport/detoxification proteindomain containing protein6e-1At3g1874060S ribosomal protein L30 (RPL30C)O.I.H.G.S.X.
0.6787.20.94Os01g0756900AK058427.1-Conserved hypothetical protein8e-2At1g67860unknown proteinO.I.H.G.S.X.
0.6787.20.95Os03g0162200AK121533.1-Histone H2A3e-11At1g52740HTA9 (HISTONE H2A PROTEIN 9)O.I.H.G.S.X.
0.6079.70.95Os03g07365009631.m05153-Syntaxin-related protein KNOLLE (Syntaxin 111)(AtSYP111)4e-5At3g11820SYP121 (SYNTAXIN OF PLANTS 121)O.I.H.G.S.X.
0.5777.00.95Os05g0438700AK120955.1-Histone H31e-47At1g09200histone H3O.I.H.G.S.X.
0.5777.00.95Os05g0507000AK108025.1--2e+0At2g11005glycine-rich proteinO.I.H.G.S.X.
0.5676.30.93Os03g0128300AK064718.1-Hypothetical protein4e-1At2g41200unknown proteinO.I.H.G.S.X.
0.5471.90.95Os12g0530000AK121752.1-Histone H2A8e-24At1g08880H2AXAO.I.H.G.S.X.
0.5269.60.95Os10g0418000AF193345.1-Histone H2A.F/Z (At3g54560)6e-10At1g52740HTA9 (HISTONE H2A PROTEIN 9)O.I.H.G.S.X.
0.4660.90.95Os06g0726800AK070518.1-G2/mitotic-specific cyclin 2 (B-like cyclin)(CycOs2)4e-6At1g20590cyclin, putativeO.I.H.G.S.X.
0.3236.30.93Os03g0857500AK072880.1-Conserved hypothetical protein2e+0At2g22802unknown proteinO.I.H.G.S.X.
0.3032.70.92Os03g0780200AK107920.1-Conserved hypothetical protein8e-2At5g17130cysteine-type peptidaseO.I.H.G.S.X.
0.3032.70.95Os01g0805600AK111939.1-Cyclin IaZm (Fragment)1e-6At2g26760CYCB1O.I.H.G.S.X.
0.2931.10.94Os04g0563700AB024987.1-Cyclin4e-6At1g76310CYCB2O.I.H.G.S.X.
0.2422.40.92Os03g0209500AK121902.1-Zn-finger, DHHC type domain containing protein4e-13At1g69420zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.1813.70.92Os04g0455600AK103788.1-Conserved hypothetical protein7e-7At4g39860unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.499.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
33.099.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
26.099.5GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.298.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.198.4GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.598.3GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.498.3GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0782GO:0051276A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.Link to AmiGO
0.0772GO:0006334The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage