CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0664900

Gene name
Homology with Arabidopsis Similar to At5g38980: unknown protein (HF=1e+0)

Module size 6 genes

NF 0.49

%ile 65.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.98 Os07g0664900 XM_354050.1 - - 1e+0 At5g38980 unknown protein O.I. H.G. S.X.
0.67 87.2 0.98 Os08g0142200 9636.m00394 - - 6e-2 At1g71910 unknown protein O.I. H.G. S.X.
0.55 73.7 0.98 Os05g0531900 9633.m04267 - - 6e+0 At3g50510 LBD28 (LOB DOMAIN-CONTAINING PROTEIN 28) O.I. H.G. S.X.
0.50 68.0 0.98 Os06g0148100 9634.m00477 - - 1e+0 At4g33660 unknown protein O.I. H.G. S.X.
0.35 41.7 0.98 Os12g0473400 9640.m02775 - - 2e+0 At5g23090 NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13) O.I. H.G. S.X.
0.30 32.7 0.98 Os01g0889101 NM_190210.1 - - 1e-3 At3g17160 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.1 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.5 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.3 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.0 98.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.6 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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