Co-expression analysis

Gene ID Os07g0664100
Gene name
Homology with ArabidopsisSimilar to At3g51880: HMGB1 (HIGH MOBILITY GROUP B 1) (HF=1e+0)
Module size 6 genes
NF 0.59
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.60.99Os07g0664100NM_186063.1-Glucose/ribitol dehydrogenase family protein1e+0At3g51880HMGB1 (HIGH MOBILITY GROUP B 1)O.I.H.G.S.X.
0.6181.20.99Os05g04836009631.m02049--2e-6At3g56490zinc-binding protein, putative / protein kinase C inhibitor, putativeO.I.H.G.S.X.
0.6079.70.99Os12g02972509640.m01989--9e-1At5g44574unknown proteinO.I.H.G.S.X.
0.4762.30.99Os05g02817009633.m01850--2e+0At4g38390unknown proteinO.I.H.G.S.X.
0.4660.90.99Os10g0401100NM_196385.1-Endonuclease/exonuclease/phosphatase familyprotein6e+0At5g25220KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)O.I.H.G.S.X.
0.4660.90.99Os08g02991009640.m02491--8e-2At2g19330leucine-rich repeat family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.599.1GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.799.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.699.0GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.798.9GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.598.9GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.898.8GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.698.8GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.398.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.098.7GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.898.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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