CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0657500

Gene name
Homology with Arabidopsis Similar to At5g64905: PROPEP3 (Elicitor peptide 3 precursor) (HF=3e-2)

Module size 10 genes

NF 0.11

%ile 8.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 87.9 0.91 Os07g0657500 AK058476.1 - - 3e-2 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) O.I. H.G. S.X.
0.25 24.1 0.95 Os07g0508200 AK069914.1 - Hypothetical protein 2e-1 At1g54215 proline-rich family protein O.I. H.G. S.X.
0.18 13.7 0.94 Os01g0899000 AK121843.1 - Pti1 kinase-like protein 3e-40 At2g43230 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.12 7.2 0.94 Os01g0976000 AK067175.1 - The start codon is not identified. 4e-9 At2g28390 SAND family protein O.I. H.G. S.X.
0.11 6.5 0.93 Os05g0400700 AK072739.1 - DNA-directed RNA polymerase II 19 kDa polypeptide(EC 2.7.7.6) (RNA polymerase II subunit 5) 2e-21 At5g59180 NRPB7 O.I. H.G. S.X.
0.09 4.9 0.93 Os03g0773100 AK065113.1 - Myb/SANT domain protein 2e-12 At2g36960 TKI1 (TSL-kinase interacting protein 1) O.I. H.G. S.X.
0.09 4.9 0.93 Os02g0280100 AK060301.1 - Micro-fibrillar-associated 1, C-terminal domaincontaining protein 4e-15 At5g17900 - O.I. H.G. S.X.
0.09 4.9 0.94 Os08g0439100 AK067282.1 - Protein of unknown function DUF1336 domaincontaining protein 1e-13 At5g35180 phosphoinositide binding O.I. H.G. S.X.
0.07 3.7 0.93 Os01g0859600 AK072151.1 - Cyclin-like F-box domain containing protein 2e-5 At1g67190 F-box family protein O.I. H.G. S.X.
0.05 2.5 0.93 Os05g0558800 AK066898.1 - Conserved hypothetical protein 1e-3 At4g28910 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.6 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.4 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.044 1 GO:0006350 The synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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