CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0656700

Gene name
Homology with Arabidopsis Similar to At5g13720: - (HF=4e-11)

Module size 7 genes

NF 0.66

%ile 89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 91.9 0.97 Os07g0656700 AU173917 - Protein of unknown function DUF1334 family protein 4e-11 At5g13720 - O.I. H.G. S.X.
0.77 93.1 0.97 Os03g0704100 AK070474.1 - PAP fibrillin family protein 2e+0 At1g35410 - O.I. H.G. S.X.
0.60 79.7 0.97 Os11g0242400 AK067025.1 - Rieske [2Fe-2S] region domain containing protein 1e-1 At1g71500 Rieske (2Fe-2S) domain-containing protein O.I. H.G. S.X.
0.59 78.0 0.97 Os01g0912700 AK068528.1 - Conserved hypothetical protein 1e-1 At2g01340 unknown protein O.I. H.G. S.X.
0.57 77.0 0.96 Os08g0114100 AK099560.1 - Conserved hypothetical protein 4e-27 At1g64680 unknown protein O.I. H.G. S.X.
0.55 73.7 0.97 Os03g0128800 AK066570.1 - Conserved hypothetical protein 7e-1 At1g23530 unknown protein O.I. H.G. S.X.
0.50 68.0 0.97 Os07g0171100 AK066475.1 - TPR-like domain containing protein 2e-16 At1g55480 binding / protein binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
57.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.061 1 GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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