CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0654400

Gene name
Homology with Arabidopsis Similar to At2g34150: WAVE1 (HF=1e-1)

Module size 6 genes

NF 0.37

%ile 42.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.83 Os07g0654400 9635.m04629 - BLE2 protein 1e-1 At2g34150 WAVE1 O.I. H.G. S.X.
0.50 68.0 0.85 Os07g0650600 AK067435.1 - BLE2 protein 4e-1 At2g31335 unknown protein O.I. H.G. S.X.
0.46 60.9 0.83 Os04g0307500 AK067041.1 - Protein kinase domain containing protein 2e-6 At3g59350 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.40 51.1 0.88 Os04g0286300 AK067467.1 - Protein kinase domain containing protein 2e-6 At5g18500 protein kinase family protein O.I. H.G. S.X.
0.23 21.2 0.85 Os01g0974400 AK106014.1 - Zn-finger, RING domain containing protein 8e-1 At2g28840 ankyrin repeat family protein O.I. H.G. S.X.
0.22 19.4 0.83 Os04g0565400 9632.m04617 - Cis-zeatin O-glucosyltransferase 6e-2 At2g43840 UDP-glucoronosyl/UDP-glucosyl transferase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
88.2 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.8 99.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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