CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0647500

Gene name
Homology with Arabidopsis Similar to At5g07950: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.31

%ile 32.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.95 Os07g0647500 NM_185919.1 - Conserved hypothetical protein 3e+0 At5g07950 unknown protein O.I. H.G. S.X.
0.61 81.2 0.95 Os04g0498200 AB047923.1 - Cytochrome c oxidase subunit 6b (OSJNBa0029H02.1protein) (OSJNBa0067K08.22 protein) 3e-10 At5g57815 cytochrome c oxidase subunit 6b, putative O.I. H.G. S.X.
0.38 46.9 0.95 Os02g0121800 AK103260.1 - Conserved hypothetical protein 2e+0 At4g13380 MEE56 (maternal effect embryo arrest 56) O.I. H.G. S.X.
0.22 19.4 0.95 Os01g0103600 AK059848.1 - Emopamil-binding family protein 5e-4 At1g20050 HYD1 (HYDRA1) O.I. H.G. S.X.
0.20 16.5 0.97 Os12g0561000 AB027123.1 - Cytochrome c oxidase polypeptide Vc (EC 1.9.3.1)(Cytochrome c oxidase subunit 5c) 1e-9 At2g47380 cytochrome c oxidase subunit Vc family protein / COX5C family protein O.I. H.G. S.X.
0.17 12.6 0.95 Os04g0601700 AK059032.1 - Vacuolar ATP synthase subunit G 1 (EC 3.6.3.14)(V-ATPase G subunit 1) (Vacuolar proton pump G subunit 1) 6e+0 At4g23710 VAG2 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.8 99.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.5 98.2 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
10.1 98.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.2 97.7 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
7.7 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.071 1 GO:0006099 A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage