CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0642900

Gene name
Homology with Arabidopsis Similar to At1g19580: GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) (HF=5e-20)

Module size 6 genes

NF 0.22

%ile 20.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.91 Os07g0642900 AK060158.1 - Trimeric LpxA-like domain containing protein 5e-20 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.50 68.0 0.96 Os08g0517900 AK064304.1 - 30S ribosomal protein S16 6e+0 At4g03120 proline-rich family protein O.I. H.G. S.X.
0.21 17.9 0.93 Os05g0371500 AK064879.1 - Conserved hypothetical protein 5e+0 At3g62330 zinc knuckle (CCHC-type) family protein O.I. H.G. S.X.
0.20 16.5 0.93 Os01g0144700 AK063058.1 - Conserved hypothetical protein 5e+0 At3g11930 universal stress protein (USP) family protein O.I. H.G. S.X.
0.15 10.3 0.93 Os02g0230000 AK109235.1 - Conserved hypothetical protein 4e-6 At4g17310 unknown protein O.I. H.G. S.X.
0.11 6.5 0.94 Os04g0692100 AK102150.1 - Tubulin folding cofactor B 1e-7 At3g10220 tubulin folding cofactor B O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.5 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.1 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.3 98.2 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
10.0 98.0 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
7.9 97.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
6.0 97.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.3 96.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage