CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0642000

Gene name
Homology with Arabidopsis Similar to At1g18680: HNH endonuclease domain-containing protein (HF=9e-4)

Module size 6 genes

NF 0.62

%ile 84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os07g0642000 NM_188821.1 - - 9e-4 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.
0.67 87.2 0.99 Os01g0390700 CA761520 - - 5e+0 At2g18890 protein kinase family protein O.I. H.G. S.X.
0.50 68.0 0.99 Os01g0374400 NM_193862.1 - Conserved hypothetical protein 4e+0 At4g33040 glutaredoxin family protein O.I. H.G. S.X.
0.50 68.0 0.99 Os09g0320000 9637.m01227 - - 2e-1 At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative O.I. H.G. S.X.
0.50 68.0 0.99 Os08g0315200 AK106325.1 - Retrotransposon gag protein family protein 1e+0 At2g27710 60S acidic ribosomal protein P2 (RPP2B) O.I. H.G. S.X.
0.38 46.9 0.99 Os01g0758800 AU082216 - Conserved hypothetical protein 1e+0 At3g26420 ATRZ-1A O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.7 99.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.0 99.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.1 99.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.5 99.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.2 99.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.9 99.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.5 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.23015.1.S1_at, orthologous to the query gene, Os07g0642000

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.4 TaAffx.23015.1.S1_at At1g18680 - - 1e+0 At1g63390 flavin-containing monooxygenase-related / FMO-related O.I. H.G. S.X.
0.63 83.1 Ta.20696.3.S1_x_at At1g18680 - - 4e+0 At5g04180 ACA3 (ALPHA CARBONIC ANHYDRASE 3) O.I. H.G. S.X.
0.46 66.8 TaAffx.5578.1.S1_at At1g18680 - - 3e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative O.I. H.G. S.X.
0.44 64.5 Ta.3696.2.S1_x_at At1g18680 - - 2e-1 At2g29125 RTFL2 (ROTUNDIFOLIA LIKE 2) O.I. H.G. S.X.
0.44 64.5 Ta.24112.2.S1_x_at At1g18680 - - 3e-1 At2g41225 unknown protein O.I. H.G. S.X.
0.39 56.1 TaAffx.5529.1.S1_at At1g18680 - - 3e+0 At3g19760 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative O.I. H.G. S.X.
0.37 53.0 TaAffx.13113.2.S1_s_at At1g18680 - - 1e+1 At5g66005 Expressed protein O.I. H.G. S.X.
0.33 46.9 TaAffx.106641.1.S1_at At1g18680 - - 4e+0 At5g17290 APG5 (AUTOPHAGY 5) O.I. H.G. S.X.
0.30 40.9 Ta.20696.3.S1_s_at At1g18680 - - 4e+0 At5g04180 ACA3 (ALPHA CARBONIC ANHYDRASE 3) O.I. H.G. S.X.
0.24 30.3 Ta.5627.3.S1_x_at At1g18680 - - 3e-1 At5g57000 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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