Co-expression analysis

Gene ID Os07g0642000
Gene name
Homology with ArabidopsisSimilar to At1g18680: HNH endonuclease domain-containing protein (HF=9e-4)
Module size 6 genes
NF 0.62
%ile 84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.99Os07g0642000NM_188821.1--9e-4At1g18680HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.6787.20.99Os01g0390700CA761520--5e+0At2g18890protein kinase family proteinO.I.H.G.S.X.
0.5068.00.99Os01g0374400NM_193862.1-Conserved hypothetical protein4e+0At4g33040glutaredoxin family proteinO.I.H.G.S.X.
0.5068.00.99Os09g03200009637.m01227--2e-1At4g10480nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeO.I.H.G.S.X.
0.5068.00.99Os08g0315200AK106325.1-Retrotransposon gag protein family protein1e+0At2g2771060S acidic ribosomal protein P2 (RPP2B)O.I.H.G.S.X.
0.3846.90.99Os01g0758800AU082216-Conserved hypothetical protein1e+0At3g26420ATRZ-1AO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.799.7GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
29.099.7GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
27.199.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
26.599.5GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
26.299.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
21.999.3GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
20.599.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.699.1GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.699.1GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.199.0GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.099.0GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.98176.1.S1_at, orthologous to the query gene, Os07g0642000

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7895.1PtpAffx.98176.1.S1_atAt1g18680SAUR family protein /// SAUR family protein-2e+0At4g30390unknown proteinO.I.H.G.S.X.
0.3153.7PtpAffx.209168.1.S1_s_atAt1g18680hypothetical protein-1e-10At5g39760AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23)O.I.H.G.S.X.
0.3052.0Ptp.7364.1.S1_a_atAt1g18680hypothetical protein-2e+0At2g47910CRR6 (chlororespiratory reduction 6)O.I.H.G.S.X.
0.2950.5PtpAffx.129254.1.S1_atAt1g18680Ca2+ antiporter/cation exchanger-4e+0At3g14070CAX9 (CATION EXCHANGER 9)O.I.H.G.S.X.
0.2238.3PtpAffx.210687.1.S1_atAt1g18680hypothetical protein-8e-31At5g50915basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.1423.5PtpAffx.70870.1.S1_atAt1g18680hypothetical protein-7e-2At1g68825RTFL15 (ROTUNDIFOLIA LIKE 15)O.I.H.G.S.X.
0.069.8PtpAffx.225023.1.S1_atAt1g18680hypothetical protein-7e-2At5g142003-isopropylmalate dehydrogenase, chloroplast, putativeO.I.H.G.S.X.
0.069.8PtpAffx.7275.1.S1_atAt1g18680hypothetical protein-2e-1At3g26561unknown proteinO.I.H.G.S.X.
0.058.3PtpAffx.64701.2.S1_a_atAt1g18680histone 2-6e-12At3g54560HTA11O.I.H.G.S.X.
0.046.9PtpAffx.203509.1.S1_atAt1g18680hypothetical protein-3e+0At5g07160DNA binding / transcription factorO.I.H.G.S.X.
0.046.9PtpAffx.249.452.S1_atAt1g18680hypothetical protein-5e-3At1g54410dehydrin family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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