CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0624900

Gene name
Homology with Arabidopsis Similar to At3g21840: ASK7 (ARABIDOPSIS SKP1-LIKE 7) (HF=1e+0)

Module size 10 genes

NF 0.09

%ile 7.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.82 95.0 0.96 Os07g0624900 9635.m04329 - SKP1 1e+0 At3g21840 ASK7 (ARABIDOPSIS SKP1-LIKE 7) O.I. H.G. S.X.
0.27 27.5 0.99 Os02g0679101 9630.m04421 - - 1e+0 At5g54580 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.22 19.4 0.98 Os04g0289800 9632.m02052 - Zn-finger, RING domain containing protein 1e-31 At1g57820 VIM1 (VARIANT IN METHYLATION 1) O.I. H.G. S.X.
0.22 19.4 0.99 Os07g0579500 9635.m03900 - - 1e+1 At5g06020 self-incompatibility protein-related O.I. H.G. S.X.
0.13 8.2 0.98 Os05g0357500 9633.m02649 - - 7e+0 At5g21060 homoserine dehydrogenase family protein O.I. H.G. S.X.
0.10 5.7 0.99 Os09g0399501 9637.m02011 - - 1e+0 At1g01730 unknown protein O.I. H.G. S.X.
0.08 4.2 0.99 Os10g0349500 NM_195928.1 - - 6e+0 At4g02610 tryptophan synthase, alpha subunit, putative O.I. H.G. S.X.
0.08 4.2 0.98 Os08g0128700 AK108671.1 - MATH domain containing protein 9e-1 At1g16810 unknown protein O.I. H.G. S.X.
0.04 2.0 0.98 Os01g0365300 NM_194036.1 - Protein of unknown function DUF239 domaincontaining protein 3e+0 At1g70960 F-box family protein O.I. H.G. S.X.
0.03 1.4 0.97 Os08g0343100 9636.m02496 - - 6e-1 At5g63280 zinc finger (C2H2 type) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
41.3 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.9 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.2 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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