CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0621800

Gene name
Homology with Arabidopsis Similar to At5g43940: HOT5 (sensitive to hot temperatures 5) (HF=7e-1)

Module size 18 genes

NF 0.21

%ile 19.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.77 Os07g0621800 AK071704.1 - Zinc-containing alcohol dehydrogenase superfamilyprotein 7e-1 At5g43940 HOT5 (sensitive to hot temperatures 5) O.I. H.G. S.X.
0.33 38.8 0.89 Os03g0722500 AK099926.1 - Glycoside hydrolase, family 17 protein 1e-3 At2g16230 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds O.I. H.G. S.X.
0.33 38.8 0.79 Os11g0427700 AK071806.1 - Conserved hypothetical protein 6e-2 At5g50300 xanthine/uracil/vitamin C permease family protein O.I. H.G. S.X.
0.32 36.3 0.82 Os04g0523600 AK070948.1 - - 9e-4 At4g15550 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE) O.I. H.G. S.X.
0.28 31.1 0.83 Os02g0231000 9630.m01266 - - 2e-9 At5g11590 TINY2 (TINY2) O.I. H.G. S.X.
0.27 27.5 0.92 Os04g0650900 AK064480.1 - Alpha-N-acetylglucosaminidase 3e-14 At5g13690 alpha-N-acetylglucosaminidase family / NAGLU family O.I. H.G. S.X.
0.19 15.1 0.83 Os04g0497200 9632.m04002 - Cellulase precursor (Cellulase homolog OR16pep)(Endo-1,4-beta-D- glucanase KORRIGAN) (EC 3.2.1.4) 4e-3 At4g39010 AtGH9B18 (Arabidopsis thaliana glycosyl hydrolase 9B18) O.I. H.G. S.X.
0.19 15.1 0.89 Os09g0426000 AK073366.1 - Protein of unknown function DUF6 domain containingprotein 3e+0 At5g67620 unknown protein O.I. H.G. S.X.
0.17 12.6 0.87 Os05g0489900 AK070533.1 - Calcium/calmodulin-dependent protein kinase 2e-5 At4g09570 CPK4 O.I. H.G. S.X.
0.15 10.3 0.85 Os07g0557400 AK065096.1 - Conserved hypothetical protein 2e-1 At5g42240 scpl42 (serine carboxypeptidase-like 42) O.I. H.G. S.X.
0.14 9.3 0.87 Os01g0708500 AK061091.1 - Conserved hypothetical protein 730 family protein 1e-8 At4g35190 unknown protein O.I. H.G. S.X.
0.14 9.3 0.87 Os09g0403000 AK111051.1 - Conserved hypothetical protein 1e-1 At1g76500 SOB3 (SUPPRESSOR OF PHYB-4#3) O.I. H.G. S.X.
0.14 9.3 0.89 Os10g0496000 AK109091.1 - The start codon is not identified. 2e-7 At2g28810 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.14 9.3 0.90 Os01g0847300 AK071164.1 - - 6e+0 At5g05860 UGT76C2 O.I. H.G. S.X.
0.14 9.3 0.91 Os12g0639600 AK122084.1 - Soluble quinoprotein glucose dehydrogenase domaincontaining protein 2e-8 At1g74790 catalytic O.I. H.G. S.X.
0.12 7.2 0.87 Os09g0420300 AK120582.1 - Methyladenine glycosylase family protein 1e-5 At1g80850 methyladenine glycosylase family protein O.I. H.G. S.X.
0.11 6.5 0.83 Os10g0377300 AY346329.1 - Homeobox domain containing protein 4e-5 At2g18550 HB-2 (HOMEOBOX-2) O.I. H.G. S.X.
0.10 5.7 0.88 Os07g0538200 AK103518.1 - Protein kinase domain containing protein 2e-11 At4g11490 protein kinase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.9 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.9 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.0 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.036 1 GO:0006281 The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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