CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0619400

Gene name
Homology with Arabidopsis Similar to At1g17880: nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative (HF=9e-2)

Module size 6 genes

NF 0.55

%ile 74.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.91 Os07g0619400 AK062716.1 - Calcium-binding EF-hand domain containing protein 9e-2 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative O.I. H.G. S.X.
0.67 87.2 0.89 Os06g0120200 AK066196.1 - Protein of unknown function DUF594 family protein 3e-1 At1g74560 NRP1 (NAP1-RELATED PROTEIN 1) O.I. H.G. S.X.
0.60 79.7 0.89 Os04g0295500 AK065384.1 - Conserved hypothetical protein 4e-1 At1g65040 protein binding / zinc ion binding O.I. H.G. S.X.
0.55 73.7 0.90 Os08g0113500 AK071052.1 - No apical meristem (NAM) protein family protein 1e-3 At2g02450 ANAC035 (Arabidopsis NAC domain containing protein 35) O.I. H.G. S.X.
0.50 68.0 0.90 Os05g0129800 9633.m00316 - DNA-binding WRKY domain containing protein 5e-10 At4g24240 WRKY7 O.I. H.G. S.X.
0.23 21.2 0.90 Os02g0318500 9630.m02046 - PDR-like ABC transporter (PDR2 ABC transporter) 1e-10 At2g36380 PDR6 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
48.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.2 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.2 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.6336.1.S1_s_at, orthologous to the query gene, Os07g0619400

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 93.6 Ptp.6336.1.S1_s_at At1g17880 hypothetical protein - 3e-7 At3g52040 unknown protein O.I. H.G. S.X.
0.80 96.0 PtpAffx.65682.1.S1_at At1g17880 hypothetical protein - 2e-16 At4g30980 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.67 91.1 PtpAffx.43752.1.A1_at At1g17880 hypothetical protein - 1e-7 At1g78310 VQ motif-containing protein O.I. H.G. S.X.
0.57 84.2 PtpAffx.139389.1.S1_at At1g17880 hypothetical protein - 1e+0 At3g23220 DNA binding / transcription factor O.I. H.G. S.X.
0.50 78.6 PtpAffx.222976.1.S1_at At1g17880 hypothetical protein - 2e-51 At5g45560 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein O.I. H.G. S.X.
0.24 41.8 PtpAffx.33365.1.S1_at At1g17880 hypothetical protein - 2e+0 At1g73780 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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