CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0615200

Gene name
Homology with Arabidopsis Similar to At1g19180: JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) (HF=7e-1)

Module size 6 genes

NF 0.21

%ile 19.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.94 Os07g0615200 AK065604.1 - ZIM domain containing protein 7e-1 At1g19180 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) O.I. H.G. S.X.
0.50 68.0 0.94 Os03g0438100 AK071443.1 - Allene oxide cyclase precursor (EC 5.3.99.6)(Allene oxide cylase) 8e-7 At3g25760 AOC1 (ALLENE OXIDE CYCLASE 1) O.I. H.G. S.X.
0.29 31.1 0.94 Os04g0556300 AY100689.1 - Glutathione peroxidase-like protein GPX54Hv 3e-33 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) O.I. H.G. S.X.
0.18 13.7 0.94 Os08g0107100 AK062216.1 - Conserved hypothetical protein 1e-2 At1g79780 - O.I. H.G. S.X.
0.13 8.2 0.94 Os08g0459600 AK071203.1 - 12-oxophytodienoate reductase 3 (EC 1.3.1.42) 2e-7 At2g06050 OPR3 (OPDA-REDUCTASE 3) O.I. H.G. S.X.
0.09 4.9 0.94 Os05g0119300 AK068289.1 - Molluscan rhodopsin C-terminal tail family protein 5e-3 At5g45350 proline-rich family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
50.5 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.6 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.8 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.2 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.057 1 GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
0.028 1 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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