CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0610400

Gene name
Homology with Arabidopsis Similar to At4g25890: 60S acidic ribosomal protein P3 (RPP3A) (HF=6e+0)

Module size 6 genes

NF 0.59

%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.89 Os07g0610400 9635.m04199 - - 6e+0 At4g25890 60S acidic ribosomal protein P3 (RPP3A) O.I. H.G. S.X.
0.71 89.6 0.90 Os12g0129000 9640.m00264 - Eukaryotic protein of unknown function DUF872family protein 3e-1 At5g65350 histone H3 O.I. H.G. S.X.
0.60 79.7 0.89 Os08g0543100 9636.m04377 - Disease resistance protein family protein 1e-1 At2g07340 prefoldin-related KE2 family protein O.I. H.G. S.X.
0.57 77.0 0.89 Os02g0704800 BM420590 - Ornithine carbamoyltransferase OOCT1 (EC 2.1.3.3) 2e+0 At1g52680 late embryogenesis abundant protein-related / LEA protein-related O.I. H.G. S.X.
0.42 53.9 0.90 Os08g0129400 9636.m00269 - - 4e+0 At1g22520 unknown protein O.I. H.G. S.X.
0.33 38.8 0.90 Os04g0380200 AK104769.1 - Conserved hypothetical protein 1e-1 At3g27210 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	91.1	0.85	Os06g0707700	AK100720.1	-	Disease resistance protein family protein	1e+0	At4g37220	stress-responsive protein, putative	O.I.	H.G.	S.X.
0.60	79.7	0.83	Os12g0222500	9640.m01155	-	Glycoside hydrolase, family 19 protein	7e-1	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	O.I.	H.G.	S.X.
0.59	78.0	0.85	Os02g0282500	9630.m01709	-	NBS-LRR protein (Fragment)	3e-1	At1g32990	PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.
0.46	60.9	0.78	Os01g0346600	AK105649.1	-	Conserved hypothetical protein	7e-1	At5g15970	KIN2	O.I.	H.G.	S.X.
0.42	53.9	0.71	Os04g0116200	AK064677.1	-	Conserved hypothetical protein	6e-1	At1g44830	AP2 domain-containing transcription factor TINY, putative	O.I.	H.G.	S.X.
0.40	51.1	0.79	Os04g0255600	9632.m01657	-	Cytochrome P450 family protein	6e-2	At4g37320	CYP81D5	O.I.	H.G.	S.X.
0.40	51.1	0.85	Os12g0199100	AK065572.1	-	Disease resistance protein family protein	2e+0	At5g49590	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.88	Os09g0436300	AK103151.1	-	Peptidase, trypsin-like serine and cysteineproteases domain containing protein	8e-1	At5g22610	F-box family protein	O.I.	H.G.	S.X.
0.38	46.9	0.77	Os07g0521800	9635.m03326	-	Disease resistance protein family protein	4e-1	At4g30900	-	O.I.	H.G.	S.X.
0.38	46.9	0.87	Os08g0484200	9636.m03794	-	Zn-finger, RING domain containing protein	7e-1	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	O.I.	H.G.	S.X.
0.36	44.0	0.84	Os01g0511700	AK071691.1	-	Hypothetical protein	7e-1	At2g14610	PR1 (PATHOGENESIS-RELATED GENE 1)	O.I.	H.G.	S.X.
0.36	44.0	0.87	Os09g0406900	AK067460.1	-	Conserved hypothetical protein	4e-1	At1g06320	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.83	Os04g0204300	AK107177.1	-	Hypothetical protein	5e-1	At5g25030	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	O.I.	H.G.	S.X.
0.34	40.0	0.80	Os06g0719800	9634.m04937	-	-	3e-7	At1g52150	ATHB-15	O.I.	H.G.	S.X.
0.30	32.7	0.84	Os02g0799700	BI812910	-	Conserved hypothetical protein	2e-1	At4g21720	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.88	Os09g0447300	CB675967	-	Cytochrome P450 family protein	2e+0	At3g52060	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.86	Os09g0101100	AK120565.1	-	-	5e-1	At3g07425	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	0.87	Os02g0112800	9630.m00121	-	-	1e+0	At1g19320	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.5 99.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.4 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.2 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.8 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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