Co-expression analysis

Gene ID Os07g0610400
Gene name
Homology with ArabidopsisSimilar to At4g25890: 60S acidic ribosomal protein P3 (RPP3A) (HF=6e+0)
Module size 6 genes
NF 0.59
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7391.10.89Os07g06104009635.m04199--6e+0At4g2589060S acidic ribosomal protein P3 (RPP3A)O.I.H.G.S.X.
0.7189.60.90Os12g01290009640.m00264-Eukaryotic protein of unknown function DUF872family protein3e-1At5g65350histone H3O.I.H.G.S.X.
0.6079.70.89Os08g05431009636.m04377-Disease resistance protein family protein1e-1At2g07340prefoldin-related KE2 family proteinO.I.H.G.S.X.
0.5777.00.89Os02g0704800BM420590-Ornithine carbamoyltransferase OOCT1 (EC 2.1.3.3)2e+0At1g52680late embryogenesis abundant protein-related / LEA protein-relatedO.I.H.G.S.X.
0.4253.90.90Os08g01294009636.m00269--4e+0At1g22520unknown proteinO.I.H.G.S.X.
0.3338.80.90Os04g0380200AK104769.1-Conserved hypothetical protein1e-1At3g27210unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.599.1GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.298.9GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.498.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.298.7GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.598.6GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.998.5GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.498.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.198.4GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.898.4GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.098.3GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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