CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0609500

Gene name
Homology with Arabidopsis Similar to At4g09462: - (HF=2e-3)

Module size 38 genes

NF 0.51

%ile 67.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.7 0.85 Os07g0609500 9635.m04190 - - 2e-3 At4g09462 - O.I. H.G. S.X.
0.90 97.1 0.93 Os09g0373600 9637.m01774 - - 3e-1 At5g57150 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.88 96.8 0.93 Os04g0331300 9632.m02484 - - 2e+0 At5g26890 unknown protein O.I. H.G. S.X.
0.81 94.8 0.92 Os01g0328200 NM_183830.1 - Conserved hypothetical protein 3e+0 At2g01100 unknown protein O.I. H.G. S.X.
0.77 93.1 0.88 Os10g0344200 9638.m01681 - - 4e+0 At3g53870 40S ribosomal protein S3 (RPS3B) O.I. H.G. S.X.
0.73 91.1 0.91 Os07g0472900 9635.m02820 - Conserved hypothetical protein 2e-1 At5g44570 unknown protein O.I. H.G. S.X.
0.69 87.9 0.93 Os01g0578200 NM_192977.1 - Zn-finger, MYND type domain containing protein 2e-3 At4g02220 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein O.I. H.G. S.X.
0.69 87.9 0.91 Os04g0143000 9632.m00486 - - 2e+0 At4g02430 pre-mRNA splicing factor, putative / SR1 protein, putative O.I. H.G. S.X.
0.67 87.2 0.90 Os06g0580300 9634.m03641 - - 5e-2 At4g18830 OFP5 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 5) O.I. H.G. S.X.
0.63 82.7 0.91 Os01g0943700 AK066782.1 - Hypothetical protein 8e-2 At1g11240 unknown protein O.I. H.G. S.X.
0.58 77.0 0.89 Os07g0450150 NM_187107.1 - - 2e+0 At4g17785 MYB39 (myb domain protein 39) O.I. H.G. S.X.
0.58 77.0 0.94 Os11g0700400 9639.m04433 - Hypothetical protein 6e+0 At5g09570 - O.I. H.G. S.X.
0.57 77.0 0.93 Os03g0605666 9631.m03929 - - 5e-1 At1g35181 unknown protein O.I. H.G. S.X.
0.56 76.3 0.90 Os11g0229600 AK111854.1 - Conserved hypothetical protein 2e+0 At4g33690 unknown protein O.I. H.G. S.X.
0.52 69.6 0.92 Os06g0619700 9634.m03998 - - 2e-1 At5g50345 - O.I. H.G. S.X.
0.50 68.0 0.87 Os09g0358700 9637.m01634 - - 2e+0 At4g19590 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.50 68.0 0.89 Os10g0459400 9638.m02789 - Conserved hypothetical protein 2e-1 At2g23630 sks16 (SKU5 Similar 16) O.I. H.G. S.X.
0.50 68.0 0.94 Os11g0676920 9639.m04193 - - 5e+0 At5g18210 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.50 68.0 0.91 Os12g0240875 9640.m01334 - - 2e-1 At5g38980 unknown protein O.I. H.G. S.X.
0.50 68.0 0.92 Os10g0454000 AK106252.1 - - 1e-5 At1g19300 PARVUS (PARVUS) O.I. H.G. S.X.
0.48 63.7 0.92 Os12g0220300 9640.m01132 - - 4e+0 At5g27541 - O.I. H.G. S.X.
0.47 62.3 0.89 Os09g0426200 9637.m02236 - - 1e+0 At3g48490 unknown protein O.I. H.G. S.X.
0.47 62.3 0.94 Os07g0147200 9635.m00468 - - 2e-1 At3g20650 mRNA capping enzyme family protein O.I. H.G. S.X.
0.46 60.9 0.95 Os09g0385800 9637.m01877 - Conserved hypothetical protein 4e-1 At5g51110 4-alpha-hydroxytetrahydrobiopterin dehydratase O.I. H.G. S.X.
0.43 55.4 0.92 Os03g0779933 9631.m05563 - - 2e+0 At3g22750 protein kinase, putative O.I. H.G. S.X.
0.42 53.9 0.92 Os12g0504600 9640.m03105 - - 3e+0 At2g31985 unknown protein O.I. H.G. S.X.
0.42 53.9 0.92 Os05g0158100 9633.m00583 - - 1e-1 At2g11910 unknown protein O.I. H.G. S.X.
0.42 53.9 0.94 Os03g0164066 9631.m00612 - - 5e-1 At1g04445 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.42 53.9 0.94 Os11g0183100 9639.m00745 - - 3e-2 At5g44570 unknown protein O.I. H.G. S.X.
0.40 51.1 0.89 Os11g0649200 9639.m03962 - - 2e-2 At5g66740 unknown protein O.I. H.G. S.X.
0.40 51.1 0.87 Os01g0737032 9629.m05209 - - 2e+0 At4g03566 unknown protein O.I. H.G. S.X.
0.35 41.7 0.92 Os04g0248300 9632.m01585 - - 3e+0 At1g02740 chromatin binding O.I. H.G. S.X.
0.33 38.8 0.91 Os07g0651000 9635.m04586 - - 1e+0 At2g12875 unknown protein O.I. H.G. S.X.
0.32 36.3 0.94 Os09g0343100 9637.m01473 - Conserved hypothetical protein 2e+0 At5g18060 auxin-responsive protein, putative O.I. H.G. S.X.
0.32 36.3 0.91 Os04g0377300 9632.m02927 - - 4e-3 At1g28190 unknown protein O.I. H.G. S.X.
0.30 32.7 0.91 Os10g0364200 NM_196057.1 - - 8e-1 At3g56970 BHLH038 O.I. H.G. S.X.
0.28 31.1 0.93 Os08g0205500 9636.m01009 - - 3e-1 At1g73560 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.28 31.1 0.95 Os10g0451500 9638.m02710 - - 5e-4 At1g62240 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.7	0.85	Os07g0609500	9635.m04190	-	-	2e-3	At4g09462	-	O.I.	H.G.	S.X.
0.90	97.1	0.93	Os09g0373600	9637.m01774	-	-	3e-1	At5g57150	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.88	96.8	0.93	Os04g0331300	9632.m02484	-	-	2e+0	At5g26890	unknown protein	O.I.	H.G.	S.X.
0.81	94.8	0.92	Os01g0328200	NM_183830.1	-	Conserved hypothetical protein	3e+0	At2g01100	unknown protein	O.I.	H.G.	S.X.
0.77	93.1	0.88	Os10g0344200	9638.m01681	-	-	4e+0	At3g53870	40S ribosomal protein S3 (RPS3B)	O.I.	H.G.	S.X.
0.73	91.1	0.91	Os07g0472900	9635.m02820	-	Conserved hypothetical protein	2e-1	At5g44570	unknown protein	O.I.	H.G.	S.X.
0.69	87.9	0.93	Os01g0578200	NM_192977.1	-	Zn-finger, MYND type domain containing protein	2e-3	At4g02220	zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein	O.I.	H.G.	S.X.
0.69	87.9	0.91	Os04g0143000	9632.m00486	-	-	2e+0	At4g02430	pre-mRNA splicing factor, putative / SR1 protein, putative	O.I.	H.G.	S.X.
0.67	87.2	0.90	Os06g0580300	9634.m03641	-	-	5e-2	At4g18830	OFP5 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 5)	O.I.	H.G.	S.X.
0.63	82.7	0.91	Os01g0943700	AK066782.1	-	Hypothetical protein	8e-2	At1g11240	unknown protein	O.I.	H.G.	S.X.
0.58	77.0	0.89	Os07g0450150	NM_187107.1	-	-	2e+0	At4g17785	MYB39 (myb domain protein 39)	O.I.	H.G.	S.X.
0.58	77.0	0.94	Os11g0700400	9639.m04433	-	Hypothetical protein	6e+0	At5g09570	-	O.I.	H.G.	S.X.
0.57	77.0	0.93	Os03g0605666	9631.m03929	-	-	5e-1	At1g35181	unknown protein	O.I.	H.G.	S.X.
0.56	76.3	0.90	Os11g0229600	AK111854.1	-	Conserved hypothetical protein	2e+0	At4g33690	unknown protein	O.I.	H.G.	S.X.
0.52	69.6	0.92	Os06g0619700	9634.m03998	-	-	2e-1	At5g50345	-	O.I.	H.G.	S.X.
0.50	68.0	0.87	Os09g0358700	9637.m01634	-	-	2e+0	At4g19590	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.50	68.0	0.89	Os10g0459400	9638.m02789	-	Conserved hypothetical protein	2e-1	At2g23630	sks16 (SKU5 Similar 16)	O.I.	H.G.	S.X.
0.50	68.0	0.94	Os11g0676920	9639.m04193	-	-	5e+0	At5g18210	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.50	68.0	0.91	Os12g0240875	9640.m01334	-	-	2e-1	At5g38980	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.92	Os10g0454000	AK106252.1	-	-	1e-5	At1g19300	PARVUS (PARVUS)	O.I.	H.G.	S.X.
0.48	63.7	0.92	Os12g0220300	9640.m01132	-	-	4e+0	At5g27541	-	O.I.	H.G.	S.X.
0.47	62.3	0.89	Os09g0426200	9637.m02236	-	-	1e+0	At3g48490	unknown protein	O.I.	H.G.	S.X.
0.47	62.3	0.94	Os07g0147200	9635.m00468	-	-	2e-1	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.
0.46	60.9	0.95	Os09g0385800	9637.m01877	-	Conserved hypothetical protein	4e-1	At5g51110	4-alpha-hydroxytetrahydrobiopterin dehydratase	O.I.	H.G.	S.X.
0.43	55.4	0.92	Os03g0779933	9631.m05563	-	-	2e+0	At3g22750	protein kinase, putative	O.I.	H.G.	S.X.
0.42	53.9	0.92	Os12g0504600	9640.m03105	-	-	3e+0	At2g31985	unknown protein	O.I.	H.G.	S.X.
0.42	53.9	0.92	Os05g0158100	9633.m00583	-	-	1e-1	At2g11910	unknown protein	O.I.	H.G.	S.X.
0.42	53.9	0.94	Os03g0164066	9631.m00612	-	-	5e-1	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.42	53.9	0.94	Os11g0183100	9639.m00745	-	-	3e-2	At5g44570	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.89	Os11g0649200	9639.m03962	-	-	2e-2	At5g66740	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.87	Os01g0737032	9629.m05209	-	-	2e+0	At4g03566	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.92	Os04g0248300	9632.m01585	-	-	3e+0	At1g02740	chromatin binding	O.I.	H.G.	S.X.
0.33	38.8	0.91	Os07g0651000	9635.m04586	-	-	1e+0	At2g12875	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	0.94	Os09g0343100	9637.m01473	-	Conserved hypothetical protein	2e+0	At5g18060	auxin-responsive protein, putative	O.I.	H.G.	S.X.
0.32	36.3	0.91	Os04g0377300	9632.m02927	-	-	4e-3	At1g28190	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.91	Os10g0364200	NM_196057.1	-	-	8e-1	At3g56970	BHLH038	O.I.	H.G.	S.X.
0.28	31.1	0.93	Os08g0205500	9636.m01009	-	-	3e-1	At1g73560	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.28	31.1	0.95	Os10g0451500	9638.m02710	-	-	5e-4	At1g62240	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
67.1 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
40.8 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.7 99.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.8 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
67.1	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
40.8	99.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.7	99.0	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.8	98.0	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1	97.9	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8	97.8	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4	97.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1	97.7	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.031 1 GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.031	1	GO:0007242	A series of reactions within the cell that occur as a result of a single trigger reaction or compound.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os07g0609500
Gene name
Homology with Arabidopsis	Similar to At4g09462: - (HF=2e-3)
Module size	38 genes
NF	0.51
%ile	67.6

Co-expression analysis

Gene ID Os07g0609500 Gene name Homology with ArabidopsisSimilar to At4g09462: - (HF=2e-3) Module size 38 genes NF 0.51 %ile 67.6

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0311GO:0007242A series of reactions within the cell that occur as a result of a single trigger reaction or compound.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os07g0609500

Gene name
Homology with Arabidopsis Similar to At4g09462: - (HF=2e-3)

Module size 38 genes

NF 0.51

%ile 67.6

SF Genes GO ID Process Name Link to AmiGO
0.031 1 GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays