Co-expression analysis

Gene ID Os07g0604600
Gene name
Homology with ArabidopsisSimilar to At1g06475: unknown protein (HF=2e-2)
Module size 6 genes
NF 0.74
%ile 95.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.86Os07g0604600AK062832.1-B12D family protein2e-2At1g06475unknown proteinO.I.H.G.S.X.
0.8395.80.86Os03g0226200U76031.1-Non-symbiotic hemoglobin 2 (rHb2) (ORYsa GLB1b)8e+0At5g02200FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE)O.I.H.G.S.X.
0.7793.10.85Os03g0182800AY323478.1-Ethylene responsive element binding factor3(OsERF3)5e-2At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.H.G.S.X.
0.7391.10.84Os03g0432100AK065739.1-Pyruvate, phosphate dikinase, chloroplastprecursor (EC 2.7.9.1) (Pyruvate, orthophosphatedikinase)5e-59At4g15530PPDK (pyruvate orthophosphate dikinase)O.I.H.G.S.X.
0.6382.70.84Os01g0185500NM_189612.1-RmlC-like cupin family protein9e-2At5g39890unknown proteinO.I.H.G.S.X.
0.4253.90.85Os03g0233900U76030.1-Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a)2e+0At1g30260-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.898.1GSM159271Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice ColeoptileLink to GEO
9.898.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.497.7GSM195225ShootGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
8.497.7GSM375765gid1-3_ shoot_replicate 1GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
8.197.7GSM375767gid1-3_ shoot_replicate 3GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
7.197.4GSM375766gid1-3_ shoot_replicate 2GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
6.797.3GSM195218stigma 1, biological rep1GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
5.997.0GSM195219stigma 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
5.596.8GSM431935Shoot- -Fe+P biological rep1GSE17245Transcriptome analysis of iron and phosphorus interaction in rice seedlingsLink to GEO
5.596.8GSM431936Shoot- -Fe+P biological rep2GSE17245Transcriptome analysis of iron and phosphorus interaction in rice seedlingsLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2001GO:0008610The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.Link to AmiGO
0.1331GO:0019252The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants.Link to AmiGO
0.1251GO:0016310The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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