CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0602900

Gene name
Homology with Arabidopsis Similar to At1g54830: NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3) (HF=5e-1)

Module size 6 genes

NF 0.25

%ile 24.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.87 Os07g0602900 9635.m04117 - Conserved hypothetical protein 5e-1 At1g54830 NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3) O.I. H.G. S.X.
0.40 51.1 0.89 Os01g0787400 AK061223.1 - Hypothetical protein 2e+0 At1g75190 unknown protein O.I. H.G. S.X.
0.29 31.1 0.92 Os05g0232500 AK069430.1 - Ubiquitin-conjugating enzymes domain containingprotein 3e-4 At3g15355 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) O.I. H.G. S.X.
0.18 13.7 0.93 Os05g0409000 AK065999.1 - Ubiquitin-associated domain containing protein 9e-5 At2g26920 ubiquitin-associated (UBA)/TS-N domain-containing protein O.I. H.G. S.X.
0.17 12.6 0.91 Os09g0456700 AK108731.1 - Conserved hypothetical protein 1e+1 At5g38317 LCR58 (Low-molecular-weight cysteine-rich 58) O.I. H.G. S.X.
0.08 4.2 0.93 Os08g0514000 9636.m04074 - Legume lectin, beta domain containing protein 3e-1 At4g02420 lectin protein kinase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.1 99.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.7 99.1 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.8 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.1 98.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.2 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.5 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.047 1 GO:0016579 The removal of one or more ubiquitin moieties from a protein.
0.034 1 GO:0006464 The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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