CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0602800

Gene name
Homology with Arabidopsis Similar to At1g74210: glycerophosphoryl diester phosphodiesterase family protein (HF=4e-2)

Module size 6 genes

NF 0.07

%ile 5.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.93 Os07g0602800 9635.m04116 - Glycerophosphoryl diester phosphodiesterase familyprotein 4e-2 At1g74210 glycerophosphoryl diester phosphodiesterase family protein O.I. H.G. S.X.
0.12 7.2 0.97 Os07g0582700 AK110773.1 - - 1e+1 At5g01600 ATFER1 O.I. H.G. S.X.
0.07 3.7 0.97 Os02g0216900 9630.m01136 - - 6e-1 At3g01910 SOX (SULFITE OXIDASE) O.I. H.G. S.X.
0.05 2.5 0.97 Os02g0507800 9630.m02913 - - 6e-1 At2g03130 ribosomal protein L12 family protein O.I. H.G. S.X.
0.05 2.5 0.96 Os01g0130800 9629.m00312 - - 5e-2 At2g39390 60S ribosomal protein L35 (RPL35B) O.I. H.G. S.X.
0.04 2.0 0.97 Os10g0430166 NM_196622.1 - - 3e-1 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
80.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
34.0 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.6 99.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 1 GO:0006071 The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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