Co-expression analysis

Gene ID Os07g0598300
Gene name
Homology with ArabidopsisSimilar to At5g07810: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (HF=3e-11)
Module size 6 genes
NF 0.72
%ile 94.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.97Os07g0598300AK122151.1-SNF2-related domain containing protein3e-11At5g07810SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.7189.60.97Os08g0166500AK103907.1-Hypothetical protein5e-2At3g09735DNA-binding S1FA family proteinO.I.H.G.S.X.
0.7189.60.97Os04g0528400AK101159.1-Hus1-like protein family protein2e-8At1g17840WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11)O.I.H.G.S.X.
0.6382.70.97Os03g0849700AK111868.1-TPR-like domain containing protein1e-1At4g02750pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.5978.00.97Os08g0520400AK064309.1-Conserved hypothetical protein2e+0At5g23940EMB3009 (embryo defective 3009)O.I.H.G.S.X.
0.5978.00.97Os02g0772300AK071492.1-GCN5-related N-acetyltransferase domain containingprotein3e+0At5g49540unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.998.4GSM154959Leaf_OsRR6-overexpressor_replicate 1GSE6720Gene expression in OsRR6-overexpression lineLink to GEO
11.898.3GSM173093Rice OsSRT1 RNAi transgenic line LM2GSE7197Down-regulation of OsSRT1 induces DNA ´╗┐fragmentation and cell death in riceLink to GEO
10.398.1GSM173094Rice OsSRT1 RNAi transgenic line LM3GSE7197Down-regulation of OsSRT1 induces DNA ´╗┐fragmentation and cell death in riceLink to GEO
7.997.6GSM254091Rice overexpressed OsSKIPa, biological repeat 1GSE10054Expression information of splicing factor OsSKIPa knock-down and overexpressed riceLink to GEO
7.697.5GSM207559Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13Link to GEO
6.297.1GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
6.297.1GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.796.9GSM173091Rice OsSRT1 RNAi transgenic line LM1GSE7197Down-regulation of OsSRT1 induces DNA ´╗┐fragmentation and cell death in riceLink to GEO
5.796.9GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.596.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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