CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0598300

Gene name
Homology with Arabidopsis Similar to At5g07810: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (HF=3e-11)

Module size 6 genes

NF 0.72

%ile 94.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.97 Os07g0598300 AK122151.1 - SNF2-related domain containing protein 3e-11 At5g07810 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein O.I. H.G. S.X.
0.71 89.6 0.97 Os08g0166500 AK103907.1 - Hypothetical protein 5e-2 At3g09735 DNA-binding S1FA family protein O.I. H.G. S.X.
0.71 89.6 0.97 Os04g0528400 AK101159.1 - Hus1-like protein family protein 2e-8 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) O.I. H.G. S.X.
0.63 82.7 0.97 Os03g0849700 AK111868.1 - TPR-like domain containing protein 1e-1 At4g02750 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.59 78.0 0.97 Os08g0520400 AK064309.1 - Conserved hypothetical protein 2e+0 At5g23940 EMB3009 (embryo defective 3009) O.I. H.G. S.X.
0.59 78.0 0.97 Os02g0772300 AK071492.1 - GCN5-related N-acetyltransferase domain containingprotein 3e+0 At5g49540 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.9 98.4 GSM154959 Leaf_OsRR6-overexpressor_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
11.8 98.3 GSM173093 Rice OsSRT1 RNAi transgenic line LM2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
10.3 98.1 GSM173094 Rice OsSRT1 RNAi transgenic line LM3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
7.9 97.6 GSM254091 Rice overexpressed OsSKIPa, biological repeat 1 GSE10054 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
7.6 97.5 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.2 97.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.2 97.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.7 96.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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