Co-expression analysis

Gene ID	Os07g0557200
Gene name
Homology with Arabidopsis	Similar to At4g05120: FUR1 (FUDR RESISTANT 1) (HF=8e-5)
Module size	6 genes
NF	0.43
%ile	54.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	76.3	0.86	Os07g0557200	AK101098.1	-	Delayed-early response protein/equilibrativenucleoside transporter family protein	8e-5	At4g05120	FUR1 (FUDR RESISTANT 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	0.85	Os09g0255000	AK069080.1	-	Cell wall invertase (EC 3.2.1.26)	4e+0	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	0.86	Os09g0461700	AK066139.1	-	Esterase/lipase/thioesterase domain containingprotein	2e-1	At5g16080	AtCXE17 (Arabidopsis thaliana carboxyesterase 17)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	0.87	Os03g0854600	AK104577.1	-	Glycoside hydrolase, family 16 domain containingprotein	7e-1	At3g50820	PSBO2 (PHOTOSYSTEM II SUBUNIT O-2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	0.87	Os06g0534800	AK120650.1	-	Ankyrin repeat containing protein	3e+0	At5g23100	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	24.1	0.86	Os09g0403000	AK111051.1	-	Conserved hypothetical protein	1e-1	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.7	98.7	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8	98.5	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8	98.5	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7	98.4	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.4	98.3	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.3	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1609986_at, orthologous to the query gene, Os07g0557200

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1609986_at	At4g05120	hypothetical protein LOC100261396	-	6e-2	At4g05130	equilibrative nucleoside transporter, putative (ENT4)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1618478_at	At4g05120	hypothetical protein LOC100259390	-	4e-3	At2g34850	MEE25 (maternal effect embryo arrest 25)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1609253_at	At4g05120	-	-	4e+0	At3g30160	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1622456_at	At4g05120	hypothetical protein LOC100245907 /// hypothetical protein LOC100265993	-	2e-1	At5g65870	ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1610013_s_at	At4g05120	hypothetical protein LOC100259835	-	6e-6	At2g26530	AR781	O.I.	H.G.	S.X.	Please select
0.25	30.5	1612186_at	At4g05120	hypothetical protein LOC100241494	-	1e+1	At5g18250	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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