CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0557200

Gene name
Homology with Arabidopsis Similar to At4g05120: FUR1 (FUDR RESISTANT 1) (HF=8e-5)

Module size 6 genes

NF 0.43

%ile 54.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.86 Os07g0557200 AK101098.1 - Delayed-early response protein/equilibrativenucleoside transporter family protein 8e-5 At4g05120 FUR1 (FUDR RESISTANT 1) O.I. H.G. S.X.
0.71 89.6 0.85 Os09g0255000 AK069080.1 - Cell wall invertase (EC 3.2.1.26) 4e+0 At5g40040 60S acidic ribosomal protein P2 (RPP2E) O.I. H.G. S.X.
0.55 73.7 0.86 Os09g0461700 AK066139.1 - Esterase/lipase/thioesterase domain containingprotein 2e-1 At5g16080 AtCXE17 (Arabidopsis thaliana carboxyesterase 17) O.I. H.G. S.X.
0.35 41.7 0.87 Os03g0854600 AK104577.1 - Glycoside hydrolase, family 16 domain containingprotein 7e-1 At3g50820 PSBO2 (PHOTOSYSTEM II SUBUNIT O-2) O.I. H.G. S.X.
0.33 38.8 0.87 Os06g0534800 AK120650.1 - Ankyrin repeat containing protein 3e+0 At5g23100 unknown protein O.I. H.G. S.X.
0.25 24.1 0.86 Os09g0403000 AK111051.1 - Conserved hypothetical protein 1e-1 At1g76500 SOB3 (SUPPRESSOR OF PHYB-4#3) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.7 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.4 98.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.212508.1.S1_at, orthologous to the query gene, Os07g0557200

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 80.5 PtpAffx.212508.1.S1_at At4g05120 equilibrative nucleoside transporter - 4e-5 At3g09990 equilibrative nucleoside transporter, putative (ENT2) O.I. H.G. S.X.
0.44 71.9 PtpAffx.76187.1.A1_at At4g05120 hypothetical protein - 2e-21 At1g70520 protein kinase family protein O.I. H.G. S.X.
0.37 62.3 PtpAffx.146636.1.A1_at At4g05120 calcium dependent protein kinase 16 - 9e-15 At5g66210 CPK28 O.I. H.G. S.X.
0.35 59.7 PtpAffx.19543.1.A1_at At4g05120 hypothetical protein - 4e-1 At1g54730 sugar transporter, putative O.I. H.G. S.X.
0.33 57.5 PtpAffx.161992.1.A1_at At4g05120 hypothetical protein - 2e-55 At5g54080 HGO (HOMOGENTISATE 1,2-DIOXYGENASE) O.I. H.G. S.X.
0.31 53.7 PtpAffx.67116.1.S1_s_at At4g05120 hypothetical protein - 5e+0 At5g19240 unknown protein O.I. H.G. S.X.
0.23 40.5 PtpAffx.41142.1.S1_at At4g05120 hypothetical protein - 5e-1 At5g05360 unknown protein O.I. H.G. S.X.
0.17 29.1 PtpAffx.205417.1.S1_at At4g05120 hypothetical protein - 2e-29 At1g09910 lyase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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