CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0555300

Gene name
Homology with Arabidopsis Similar to At3g22840: ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) (HF=9e-2)

Module size 6 genes

NF 0.38

%ile 45.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.1 0.98 Os07g0555300 AK071161.1 - Hypothetical protein 9e-2 At3g22840 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) O.I. H.G. S.X.
0.60 79.7 0.98 Os02g0159400 AK109550.1 - Hypothetical protein 8e-2 At3g46666 unknown protein O.I. H.G. S.X.
0.40 51.1 0.99 Os12g0626000 AK109499.1 - Hypothetical protein 9e-3 At3g13570 SCL30a O.I. H.G. S.X.
0.38 46.9 0.98 Os11g0256100 9639.m01387 - Protein prenyltransferase domain containingprotein 2e-1 At2g22070 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.23 21.2 0.99 Os09g0413300 9637.m02118 - TPR-like domain containing protein 3e-1 At4g02750 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.21 17.9 0.99 Os08g0112400 AK071947.1 - TPR-like domain containing protein 9e-2 At1g71490 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
60.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.3 97.9 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
9.3 97.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.2 97.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.5 97.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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