Co-expression analysis

Gene ID Os07g0546100
Gene name
Homology with ArabidopsisSimilar to At1g11480: eukaryotic translation initiation factor-related (HF=2e-2)
Module size 6 genes
NF 0.49
%ile 65.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5371.30.97Os07g0546100AK100024.1-Conserved hypothetical protein2e-2At1g11480eukaryotic translation initiation factor-relatedO.I.H.G.S.X.
0.8094.60.97Os06g0507400AK066411.1-BTB/POZ domain containing protein3e-10At3g61600ATPOB1O.I.H.G.S.X.
0.5573.70.97Os12g0106900AK102466.1-Hemopexin domain containing protein7e-1At3g27080TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)O.I.H.G.S.X.
0.5371.30.97Os05g0292200AK065373.1-Transcription factor IIA large subunit (TFIIA-L1)3e+0At4g14315unknown proteinO.I.H.G.S.X.
0.4660.90.97Os08g0537800AK059388.1-The start codon is not identified.4e-2At2g3760060S ribosomal protein L36 (RPL36A)O.I.H.G.S.X.
0.2625.60.97Os09g0281600AK067020.1-SWAP/Surp domain containing protein6e-12At3g52120SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.298.5GSM100442Rice Azucena 1ppm Arsenate Rep2GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
9.097.8GSM100446Rice Bala 1ppm Arsenate Rep2GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
7.697.5GSM100445Rice Bala 1ppm Arsenate Rep1GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
7.397.5GSM149410Rice Azucena 1ppm Arsenate Rep3GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
6.297.1GSM100441Rice Azucena 1ppm Arsenate Rep1GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
5.296.7GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
4.796.4GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.596.3GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.296.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.095.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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