CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0543300

Gene name
Homology with Arabidopsis Similar to At5g43401: - (HF=2e+1)

Module size 6 genes

NF 0.60

%ile 81.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.97 Os07g0543300 BM418911 - Glycoside hydrolase, family 14B, plant protein 2e+1 At5g43401 - O.I. H.G. S.X.
0.53 71.3 0.99 Os08g0279900 9636.m01788 - - 2e-1 At1g74140 - O.I. H.G. S.X.
0.50 68.0 0.99 Os11g0638700 CA766587 - Conserved hypothetical protein 1e+0 At5g66490 unknown protein O.I. H.G. S.X.
0.50 68.0 0.99 Os04g0657600 AK119428.1 - Cyclin-like F-box domain containing protein 3e+0 At4g01600 GRAM domain-containing protein / ABA-responsive protein-related O.I. H.G. S.X.
0.46 60.9 0.99 Os09g0489800 AK119382.1 - Hypothetical protein 6e-3 At5g06950 AHBP-1B O.I. H.G. S.X.
0.40 51.1 0.99 Os04g0177000 9632.m00847 - Protein kinase domain containing protein 1e-4 At5g38250 serine/threonine protein kinase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.4 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.0 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.27780.2.A1_a_at, orthologous to the query gene, Os07g0543300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 89.1 Ta.27780.2.A1_a_at At5g43401 - - 6e+0 At5g15940 binding / catalytic/ oxidoreductase O.I. H.G. S.X.
0.80 92.2 Ta.24114.8.S1_x_at At5g43401 Gamma-gliadin - 7e-1 At3g13810 AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11) O.I. H.G. S.X.
0.77 90.8 TaAffx.128418.2.S1_x_at At5g43401 gamma-gliadin /// gamma-gliadin /// gamma-gliadin - 2e+0 At3g42150 unknown protein O.I. H.G. S.X.
0.73 89.1 Ta.24298.1.S1_x_at At5g43401 - - 1e+0 At4g15950 NRPD4 O.I. H.G. S.X.
0.73 89.1 Ta.24114.1.S1_x_at At5g43401 pre-alpha-/beta-gliadin A-II - 3e+0 At5g53590 auxin-responsive family protein O.I. H.G. S.X.
0.67 86.3 Ta.30782.9.S1_x_at At5g43401 Gamma-gliadin - 8e-1 At3g20865 AGP40 (arabinogalactan-protein 40) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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