Co-expression analysis

Gene ID Os07g0530600
Gene name
Homology with ArabidopsisSimilar to At3g01200: AtRP2 (PPDK regulatory protein 2) (HF=6e-5)
Module size 6 genes
NF 0.43
%ile 53.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4660.90.84Os07g0530600AK120747.1-Protein of unknown function DUF299 family protein6e-5At3g01200AtRP2 (PPDK regulatory protein 2)O.I.H.G.S.X.
0.6181.20.79Os07g0561800AK108426.1-Hypothetical protein6e-2At2g05510glycine-rich proteinO.I.H.G.S.X.
0.5573.70.80Os04g0585000AK106934.1-Hypothetical protein2e-2At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeO.I.H.G.S.X.
0.5068.00.85Os01g0812200AK072651.1-Cyclin-like F-box domain containing protein3e-10At4g18380F-box family proteinO.I.H.G.S.X.
0.3134.50.85Os08g0497600AK121435.1-Peptidase S9A, prolyl oligopeptidase, N-terminalbeta-propeller domain containing protein7e-8At1g55680WD-40 repeat family proteinO.I.H.G.S.X.
0.2117.90.84Os01g0867300U25283.1-OSE2-like protein (Fragment)2e-1At5g20130unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.599.1GSM302916endo6D_rep1GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
12.798.4GSM159211Seed (S2, 3 - 4 dap), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
10.398.1GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.298.0GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.898.0GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.798.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.097.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage