CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0524900

Gene name
Homology with Arabidopsis Similar to At4g16240: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.61

%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.87 Os07g0524900 AK071512.1 - Protein of unknown function DUF6 domain containingprotein 3e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.67 87.2 0.89 Os04g0467000 AK073154.1 - Conserved hypothetical protein 2e+0 At4g30850 HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) O.I. H.G. S.X.
0.57 77.0 0.88 Os02g0183000 9630.m00818 - Zinc-binding protein 2e-5 At2g12646 - O.I. H.G. S.X.
0.55 73.7 0.87 Os10g0459700 AK110328.1 - Xyloglucan galactosyltransferase 7e-2 At4g13990 exostosin family protein O.I. H.G. S.X.
0.40 51.1 0.88 Os04g0532100 AK109281.1 - Short-chain dehydrogenase/reductase SDR familyprotein 2e-1 At3g59710 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.38 46.9 0.88 Os06g0660200 AK101191.1 - Auxin efflux carrier component 2 (AtPIN2) (Auxinefflux carrier AGR) (Polar-auxin-transport effluxcomponent AGRAVITROPIC 1) (AtAGR1) (Ethylene insensitiveroot 1) (AtEIR1) (WAVY6) 1e-15 At1g70940 PIN3 (PIN-FORMED 3) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.87	Os07g0524900	AK071512.1	-	Protein of unknown function DUF6 domain containingprotein	3e+0	At4g16240	unknown protein	O.I.	H.G.	S.X.
0.67	87.2	0.89	Os04g0467000	AK073154.1	-	Conserved hypothetical protein	2e+0	At4g30850	HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)	O.I.	H.G.	S.X.
0.57	77.0	0.88	Os02g0183000	9630.m00818	-	Zinc-binding protein	2e-5	At2g12646	-	O.I.	H.G.	S.X.
0.55	73.7	0.87	Os10g0459700	AK110328.1	-	Xyloglucan galactosyltransferase	7e-2	At4g13990	exostosin family protein	O.I.	H.G.	S.X.
0.40	51.1	0.88	Os04g0532100	AK109281.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	2e-1	At3g59710	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.38	46.9	0.88	Os06g0660200	AK101191.1	-	Auxin efflux carrier component 2 (AtPIN2) (Auxinefflux carrier AGR) (Polar-auxin-transport effluxcomponent AGRAVITROPIC 1) (AtAGR1) (Ethylene insensitiveroot 1) (AtEIR1) (WAVY6)	1e-15	At1g70940	PIN3 (PIN-FORMED 3)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.75	91.9	0.84	Os04g0494600	AK110895.1	-	Protein of unknown function DUF642 family protein	5e-2	At3g17410	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.
0.67	87.2	0.83	Os06g0163900	AK102733.1	-	Disease resistance protein family protein	1e-1	At2g41990	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.79	Os06g0652600	AK101495.1	-	Lustrin A	2e-1	At2g40970	myb family transcription factor	O.I.	H.G.	S.X.
0.50	68.0	0.79	Os11g0689100	AK108692.1	-	Disease resistance protein family protein	2e+0	At4g22400	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.83	Os03g0121300	AK064633.1	-	Peroxidase 1	9e-3	At5g14130	peroxidase, putative	O.I.	H.G.	S.X.
0.44	58.1	0.85	Os07g0638500	AK108983.1	-	-	8e+0	Atmg01370	-	O.I.	H.G.	S.X.
0.40	51.1	0.74	Os01g0598000	AK068878.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	2e-4	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	O.I.	H.G.	S.X.
0.40	51.1	0.75	Os09g0414900	AK059073.1	-	GASA5-like protein (Fragment)	6e-3	At3g10185	-	O.I.	H.G.	S.X.
0.40	51.1	0.78	Os01g0327000	NM_183815.1	-	Conserved hypothetical protein	7e-7	At1g14540	anionic peroxidase, putative	O.I.	H.G.	S.X.
0.40	51.1	0.81	Os04g0308400	CB965389	-	Conserved hypothetical protein	1e+1	At3g48020	-	O.I.	H.G.	S.X.
0.39	48.3	0.86	Os02g0454500	AK064156.1	-	Membrane bound O-acyl transferase, MBOAT familyprotein	5e-5	At5g55360	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	O.I.	H.G.	S.X.
0.38	46.9	0.86	Os08g0253800	AK108045.1	-	Glycosyl transferase, family 2 domain containingprotein	7e-14	At4g31590	ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5)	O.I.	H.G.	S.X.
0.36	44.0	0.86	Os04g0308300	9632.m02269	-	Conserved hypothetical protein	8e-1	At2g34110	-	O.I.	H.G.	S.X.
0.35	41.7	0.82	Os10g0529400	AF402796.1	-	Tau class GST protein 4	2e-3	At4g33560	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.78	Os04g0107600	AK058573.1	-	Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)	1e+0	At5g08139	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.31	34.5	0.90	Os07g0573000	AK120026.1	-	Conserved hypothetical protein	1e-3	At5g46030	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.71	Os12g0204800	AK102485.1	-	Disease resistance protein family protein	3e-1	At1g10230	ASK18 (ARABIDOPSIS SKP1-LIKE 18)	O.I.	H.G.	S.X.
0.29	31.1	0.85	Os04g0132500	AK121779.1	-	Protein kinase domain containing protein	5e-4	At3g24240	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.29	31.1	0.86	Os09g0300800	AK063465.1	-	Plant protein of unknown function family protein	6e-2	At1g22370	AtUGT85A5 (UDP-glucosyl transferase 85A5)	O.I.	H.G.	S.X.
0.26	25.6	0.79	Os04g0688200	AK101245.1	-	Anionic peroxidase precursor	3e-5	At1g60140	ATTPS10 (trehalose phosphate synthase)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
37.4 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.1 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
37.4	99.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.1	98.8	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2	98.8	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2	98.8	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9	98.4	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8	98.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4	98.2	GSM195219	stigma 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os07g0524900
Gene name
Homology with Arabidopsis	Similar to At4g16240: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.61
%ile	83.6

Co-expression analysis

Gene ID Os07g0524900 Gene name Homology with ArabidopsisSimilar to At4g16240: unknown protein (HF=3e+0) Module size 6 genes NF 0.61 %ile 83.6

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os07g0524900

Gene name
Homology with Arabidopsis Similar to At4g16240: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.61

%ile 83.6

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays