CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0524900

Gene name
Homology with Arabidopsis Similar to At4g16240: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.61

%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.87 Os07g0524900 AK071512.1 - Protein of unknown function DUF6 domain containingprotein 3e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.67 87.2 0.89 Os04g0467000 AK073154.1 - Conserved hypothetical protein 2e+0 At4g30850 HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) O.I. H.G. S.X.
0.57 77.0 0.88 Os02g0183000 9630.m00818 - Zinc-binding protein 2e-5 At2g12646 - O.I. H.G. S.X.
0.55 73.7 0.87 Os10g0459700 AK110328.1 - Xyloglucan galactosyltransferase 7e-2 At4g13990 exostosin family protein O.I. H.G. S.X.
0.40 51.1 0.88 Os04g0532100 AK109281.1 - Short-chain dehydrogenase/reductase SDR familyprotein 2e-1 At3g59710 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.38 46.9 0.88 Os06g0660200 AK101191.1 - Auxin efflux carrier component 2 (AtPIN2) (Auxinefflux carrier AGR) (Polar-auxin-transport effluxcomponent AGRAVITROPIC 1) (AtAGR1) (Ethylene insensitiveroot 1) (AtEIR1) (WAVY6) 1e-15 At1g70940 PIN3 (PIN-FORMED 3) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
37.4 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.1 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.221719.1.S1_at, orthologous to the query gene, Os07g0524900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 87.0 PtpAffx.221719.1.S1_at At4g16240 hypothetical protein - 9e-1 At5g35100 peptidyl-prolyl cis-trans isomerase O.I. H.G. S.X.
0.21 36.5 PtpAffx.40421.2.A1_at At4g16240 - - 4e-1 At4g20380 zinc finger protein (LSD1) O.I. H.G. S.X.
0.14 23.5 PtpAffx.209521.1.S1_at At4g16240 hypothetical protein - 2e-2 At1g12380 unknown protein O.I. H.G. S.X.
0.06 9.8 PtpAffx.211789.1.S1_at At4g16240 hypothetical protein - 3e-2 At4g03090 sequence-specific DNA binding / transcription factor O.I. H.G. S.X.
0.06 9.8 PtpAffx.63336.1.A1_at At4g16240 - - 9e-1 At4g10160 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.04 6.9 PtpAffx.210650.1.S1_at At4g16240 hypothetical protein - 3e-15 At4g24900 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage