Co-expression analysis

Gene ID	Os07g0524900
Gene name
Homology with Arabidopsis	Similar to At4g16240: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.61
%ile	83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.9	0.87	Os07g0524900	AK071512.1	-	Protein of unknown function DUF6 domain containingprotein	3e+0	At4g16240	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.89	Os04g0467000	AK073154.1	-	Conserved hypothetical protein	2e+0	At4g30850	HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	0.88	Os02g0183000	9630.m00818	-	Zinc-binding protein	2e-5	At2g12646	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	0.87	Os10g0459700	AK110328.1	-	Xyloglucan galactosyltransferase	7e-2	At4g13990	exostosin family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	0.88	Os04g0532100	AK109281.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	2e-1	At3g59710	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	0.88	Os06g0660200	AK101191.1	-	Auxin efflux carrier component 2 (AtPIN2) (Auxinefflux carrier AGR) (Polar-auxin-transport effluxcomponent AGRAVITROPIC 1) (AtAGR1) (Ethylene insensitiveroot 1) (AtEIR1) (WAVY6)	1e-15	At1g70940	PIN3 (PIN-FORMED 3)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
37.4	99.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.1	98.8	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2	98.8	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2	98.8	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9	98.4	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8	98.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4	98.2	GSM195219	stigma 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig10919_s_at, orthologous to the query gene, Os07g0524900

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	Contig10919_s_at	At4g16240	-	-	3e-1	At5g15760	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig1141_s_at	At4g16240	-	-	2e-12	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig10187_at	At4g16240	-	-	1e-2	At1g72080	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig16079_at	At4g16240	-	-	1e-4	At2g37640	EXP3	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig15176_at	At4g16240	-	-	2e+0	At3g47790	ATATH7	O.I.	H.G.	S.X.	Please select
0.05	4.1	rbaal40g12_at	At4g16240	-	-	1e+0	At5g18850	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	Contig25590_at	At4g16240	-	-	5e+0	At5g28800	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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