Co-expression analysis

Gene ID Os07g0517300
Gene name
Homology with ArabidopsisSimilar to At3g16730: unknown protein (HF=1e-3)
Module size 6 genes
NF 0.52
%ile 68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6181.20.91Os07g0517300NM_187401.1-Conserved hypothetical protein1e-3At3g16730unknown proteinO.I.H.G.S.X.
0.7391.10.94Os04g0412800AK060508.1-Type I collagen alpha 16e-2At2g36080DNA-binding protein, putativeO.I.H.G.S.X.
0.5371.30.93Os03g07503009631.m05296-Hypothetical protein2e-16At3g44050kinesin motor protein-relatedO.I.H.G.S.X.
0.5068.00.93Os02g06382009630.m04078-Conserved hypothetical protein6e-2At1g70895CLE17 (CLAVATA3/ESR-RELATED 17)O.I.H.G.S.X.
0.4762.30.93Os07g06286009635.m04365-Origin recognition complex subunit 6 familyprotein3e-2At1g26840ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6)O.I.H.G.S.X.
0.3032.70.93Os09g05308009637.m03036-Proteinase inhibitor I9, subtilisin propeptidedomain containing protein7e-2At1g32980subtilisin-like serine protease-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.298.5GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
4.095.9GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.795.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.495.2GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.495.2GSM195224Suspension cellGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
3.495.2GSM359912IR29 root, salt-treated, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stressLink to GEO
3.395.1GSM409429Nipponbare_young panicle 2cm, biological rep5GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
3.294.9GSM409428Nipponbare_young panicle 2cm, biological rep4GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
3.294.9GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.194.8GSM409421Nipponbare_young panicle 2cm, biological rep1GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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