CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0516400

Gene name
Homology with Arabidopsis Similar to At5g27690: heavy-metal-associated domain-containing protein (HF=2e+0)

Module size 16 genes

NF 0.31

%ile 34.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 99.4 0.91 Os07g0516400 NM_187395.1 - Conserved hypothetical protein 2e+0 At5g27690 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.54 71.9 0.96 Os09g0499300 9637.m02833 - - 8e-2 At2g39250 SNZ (SCHNARCHZAPFEN) O.I. H.G. S.X.
0.42 53.9 0.95 Os07g0193400 9635.m00919 - - 2e-3 At5g04690 - O.I. H.G. S.X.
0.38 46.9 0.96 Os08g0512100 9636.m04059 - - 6e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.32 36.3 0.96 Os05g0503650 9633.m03978 - - 3e+0 At5g06040 self-incompatibility protein-related O.I. H.G. S.X.
0.32 36.3 0.97 Os03g0343100 9631.m02234 - - 3e-1 At4g34590 GBF6 (G-BOX BINDING FACTOR 6) O.I. H.G. S.X.
0.27 27.5 0.97 Os10g0479800 AK107572.1 - Protein of unknown function DUF1336 domaincontaining protein 6e-25 At2g28320 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein O.I. H.G. S.X.
0.25 24.1 0.96 Os04g0591800 9632.m04882 - - 2e+0 At2g30766 unknown protein O.I. H.G. S.X.
0.25 24.1 0.96 Os07g0526500 9635.m03382 - - 2e-1 At4g20220 - O.I. H.G. S.X.
0.25 24.1 0.97 Os01g0170800 AK101200.1 - Protein prenyltransferase domain containingprotein 9e-1 At2g21880 ATRAB7A O.I. H.G. S.X.
0.24 22.4 0.96 Os01g0158800 NM_184457.1 - - 6e-2 At5g62320 ATMYB99 (MYB DOMAIN PROTEIN 99) O.I. H.G. S.X.
0.23 21.2 0.95 Os08g0544700 AK111366.1 - Conserved hypothetical protein 5e+0 At1g79040 PSBR (photosystem II subunit R) O.I. H.G. S.X.
0.23 21.2 0.96 Os06g0616900 AK107912.1 - Conserved hypothetical protein 4e-4 At2g23310 ATRER1C1 O.I. H.G. S.X.
0.22 19.4 0.98 Os02g0160300 AK120181.1 - Conserved hypothetical protein 5e-5 At3g19940 sugar transporter, putative O.I. H.G. S.X.
0.21 17.9 0.98 Os08g0295800 9636.m01959 - - 2e+1 At5g62950 catalytic/ nucleotide binding O.I. H.G. S.X.
0.16 11.3 0.96 Os02g0101300 AK105715.1 - Conserved hypothetical protein 9e-2 At5g40500 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.7 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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