CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0512200

Gene name
Homology with Arabidopsis Similar to At4g21980: APG8A (AUTOPHAGY 8A) (HF=2e-40)

Module size 6 genes

NF 0.78

%ile 97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os07g0512200 CF292921 - Symbiosis-related like protein 2e-40 At4g21980 APG8A (AUTOPHAGY 8A) O.I. H.G. S.X.
0.73 91.1 0.98 Os01g0707300 AK104463.1 - Vesicle transport v-SNARE family protein 6e-7 At3g29100 VTI13 O.I. H.G. S.X.
0.67 87.2 0.98 Os05g0409300 AK065214.1 - Cysteine protease inhibitor cystatin (Fragment) 2e+0 At2g20260 PSAE-2 (photosystem I subunit E-2) O.I. H.G. S.X.
0.67 87.2 0.98 Os02g0792900 AK068367.1 - TMS membrane protein/tumour differentiallyexpressed protein family protein 1e-15 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein O.I. H.G. S.X.
0.60 79.7 0.97 Os02g0119400 AK102774.1 - Syntaxin 52 (AtSYP52) 4e-11 At1g79590 SYP52 (SYNTAXIN OF PLANTS 52) O.I. H.G. S.X.
0.60 79.7 0.98 Os09g0394900 AK061821.1 - Annexin-like protein 3e+0 At5g23640 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.7 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.7 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.7 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.1 97.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.6019.2.S1_s_at, orthologous to the query gene, Os07g0512200

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 83.9 Ptp.6019.2.S1_s_at At4g21980 hypothetical protein - 1e-25 At1g62040 ATG8C (autophagy 8c) O.I. H.G. S.X.
0.63 88.1 PtpAffx.249.18.A1_x_at At4g21980 - - 3e-77 At4g02890 UBQ14 O.I. H.G. S.X.
0.61 87.0 PtpAffx.206347.1.S1_at At4g21980 hypothetical protein - 2e-4 At3g51650 unknown protein O.I. H.G. S.X.
0.60 86.0 Ptp.1502.1.S1_a_at At4g21980 hypothetical protein - 2e-11 At1g51200 zinc finger (AN1-like) family protein O.I. H.G. S.X.
0.50 78.6 PtpAffx.21710.1.S1_s_at At4g21980 hypothetical protein - 8e-120 At1g10630 ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) O.I. H.G. S.X.
0.46 73.7 Ptp.7476.1.A1_s_at At4g21980 hypothetical protein - 4e-42 At1g20110 zinc finger (FYVE type) family protein O.I. H.G. S.X.
0.45 72.3 Ptp.2453.1.S1_at At4g21980 hypothetical protein - 2e-28 At5g52240 MSBP1 (membrane steroid binding protein 1) O.I. H.G. S.X.
0.44 71.9 Ptp.4306.1.S1_at At4g21980 hypothetical protein - 5e-78 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) O.I. H.G. S.X.
0.32 55.2 Ptp.799.1.S1_s_at At4g21980 hypothetical protein - 3e-82 At4g27960 UBC9 (UBIQUITIN CONJUGATING ENZYME 9) O.I. H.G. S.X.
0.27 47.1 Ptp.4622.1.S1_s_at At4g21980 hypothetical protein - 7e-93 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) O.I. H.G. S.X.
0.25 43.6 Ptp.5592.1.S1_at At4g21980 hypothetical protein - 5e-82 At5g38480 GRF3 (GENERAL REGULATORY FACTOR 3) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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