CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0510100

Gene name
Homology with Arabidopsis Similar to At1g13270: MAP1C (METHIONINE AMINOPEPTIDASE 1B) (HF=3e-19)

Module size 6 genes

NF 0.69

%ile 91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.95 Os07g0510100 AK066776.1 - Methionine aminopeptidase-like protein 3e-19 At1g13270 MAP1C (METHIONINE AMINOPEPTIDASE 1B) O.I. H.G. S.X.
0.71 89.6 0.91 Os01g0829000 AK065327.1 - Conserved hypothetical protein 7e-1 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.55 73.7 0.95 Os03g0736400 AK105812.1 - Conserved hypothetical protein 95 family protein 1e-24 At3g28460 unknown protein O.I. H.G. S.X.
0.55 73.7 0.95 Os08g0345400 AK065348.1 - Conserved hypothetical protein 1e-2 At2g04360 unknown protein O.I. H.G. S.X.
0.55 73.7 0.95 Os01g0618400 NM_192814.1 - RNA helicase (Fragment) 2e-20 At5g63630 DEAD box RNA helicase, putative O.I. H.G. S.X.
0.50 68.0 0.94 Os01g0306800 AK099426.1 - Conserved hypothetical protein 9e-1 At5g42370 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.7 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.1 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.2 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.4 97.9 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage