CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0507500

Gene name
Homology with Arabidopsis Similar to At2g01080: - (HF=3e-1)

Module size 6 genes

NF 0.73

%ile 95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.92 Os07g0507500 AK100690.1 - Hypothetical protein 3e-1 At2g01080 - O.I. H.G. S.X.
0.83 95.8 0.89 Os03g0212300 AK070861.1 - Transcriptional factor B3 family protein 7e-1 At1g64370 unknown protein O.I. H.G. S.X.
0.80 94.6 0.91 Os02g0753900 9630.m05091 - Conserved hypothetical protein 6e-2 At5g15820 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.63 82.7 0.91 Os01g0122000 AK109465.1 - TRAF-like domain containing protein 8e-1 At5g18748 unknown protein O.I. H.G. S.X.
0.56 76.3 0.88 Os07g0188000 AK100285.1 - Argonaute protein 3e-5 At2g27880 AGO5 (ARGONAUTE 5) O.I. H.G. S.X.
0.56 76.3 0.89 Os08g0554100 AK120710.1 - Rhamnogalacturonate lyase family protein 2e-5 At4g24430 lyase O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.0 97.4 GSM159212 Seed (S2, 3 - 4 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
6.4 97.2 GSM159208 Seed (S1, 0 - 2 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.9 95.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.8 95.7 GSM159207 Seed (S1, 0 - 2 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
3.7 95.6 GSM159209 Seed (S1, 0 - 2 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
3.2 94.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.2 94.9 GSM159211 Seed (S2, 3 - 4 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.0 94.6 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
2.9 94.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.9 94.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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