CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0496200

Gene name
Homology with Arabidopsis Similar to At2g13560: malate oxidoreductase, putative (HF=3e-48)

Module size 16 genes

NF 0.42

%ile 52.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 91.9 0.96 Os07g0496200 AK061706.1 - NAD-dependent malic enzyme 62 kDa isoform,mitochondrial precursor (EC 1.1.1.39) (NAD-ME) 3e-48 At2g13560 malate oxidoreductase, putative O.I. H.G. S.X.
0.58 77.0 0.96 Os03g0860900 AK111575.1 - Lissencephaly type-1-like homology motif domaincontaining protein 4e-1 At2g32700 WD-40 repeat family protein O.I. H.G. S.X.
0.53 71.3 0.96 Os01g0355600 NM_193973.1 - Galactose-binding like domain containing protein 6e-7 At3g59770 SAC9 O.I. H.G. S.X.
0.50 68.0 0.97 Os04g0452400 AK068069.1 - Ubiquitin-specific protease 4 (UBP4)(At2g22310/T26C19.3) 1e-42 At2g22310 ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) O.I. H.G. S.X.
0.48 63.7 0.96 Os02g0758100 AK064259.1 - LMBR1-like conserved region domain containingprotein 2e-30 At5g65290 LMBR1 integral membrane family protein O.I. H.G. S.X.
0.47 62.3 0.96 Os09g0525600 AK063524.1 - UBX domain containing protein 2e-11 At4g11740 SAY1 O.I. H.G. S.X.
0.47 62.3 0.97 Os02g0437800 AK067724.1 - Vacuolar protein-sorting protein 45 homolog(AtVPS45) 2e-27 At1g77140 VPS45 (VACUOLAR PROTEIN SORTING 45) O.I. H.G. S.X.
0.40 51.1 0.97 Os07g0461600 AK121366.1 - TA7 protein (Fragment) 1e+0 At2g19890 unknown protein O.I. H.G. S.X.
0.39 48.3 0.96 Os02g0137500 CB636214 - HAC4 (Fragment) 2e-12 At1g79000 HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) O.I. H.G. S.X.
0.39 48.3 0.97 Os05g0592500 AK099566.1 - SIT4 phosphatase-associated protein family protein 8e-24 At1g30470 SIT4 phosphatase-associated family protein O.I. H.G. S.X.
0.38 46.9 0.96 Os10g0575200 AK066761.1 - Protein psi1 (Protein psi) 1e-30 At2g26890 GRV2 (GRAVITROPISM DEFECTIVE 2) O.I. H.G. S.X.
0.38 46.9 0.97 Os12g0165000 AK112045.1 - WD40-like domain containing protein 3e+0 At3g05090 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.37 45.0 0.97 Os01g0337600 AK119468.1 - Protein of unknown function DUF625 domaincontaining protein 8e-4 At3g06670 binding O.I. H.G. S.X.
0.37 45.0 0.97 Os01g0916200 AK073904.1 - Adaptin, N-terminal domain containing protein 4e-35 At1g31730 epsilon-adaptin, putative O.I. H.G. S.X.
0.33 38.8 0.97 Os12g0110000 AY491431.1 - Regulatory associated protein of TOR familyprotein 3e-52 At3g08850 RAPTOR1 O.I. H.G. S.X.
0.24 22.4 0.96 Os01g0945800 AK072850.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-17 At4g36960 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.6 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.0 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.100 1 GO:0016192 The directed movement of substances into, out of or within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane. Vesicles are then targeted to, and fuse with, an acceptor membrane.
0.095 1 GO:0006108 The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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