CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os07g0496000

Gene name
Homology with Arabidopsis Similar to At2g44610: RAB6A (HF=9e-68)

Module size 10 genes

NF 0.58

%ile 78.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 0.97 Os07g0496000 AK111986.1 - Nt-rab6 protein 9e-68 At2g44610 RAB6A O.I. H.G. S.X.
0.73 91.1 0.98 Os03g0355600 AK068938.1 - Adapter-related protein complex 1 beta 1 subunit(Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit)(Clathrin assembly protein complex 1 beta large chain).Splice isoform B 0 At4g23460 beta-adaptin, putative O.I. H.G. S.X.
0.67 87.2 0.97 Os05g0461300 AK111917.1 - Ras-related protein Rab-8A (Oncogene c-mel) 4e-48 At3g53610 ATRAB8 O.I. H.G. S.X.
0.63 82.7 0.98 Os03g0112400 AK063082.1 - AP2 adaptor, appendage domain containing protein 5e-2 At5g22770 alpha-ADR (alpha-adaptin) O.I. H.G. S.X.
0.61 81.2 0.98 Os05g0556100 AK065908.1 - SDL5A 1e-43 At3g61760 ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B) O.I. H.G. S.X.
0.60 79.7 0.98 Os02g0537900 AK070310.1 - Vacuolar-type H+-translocating inorganicpyrophosphatase (EC 3.6.1.1) 5e-87 At1g16780 vacuolar-type H+-translocating inorganic pyrophosphatase, putative O.I. H.G. S.X.
0.53 71.3 0.98 Os03g0227000 AK068454.1 - Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP) 1e-25 At4g34450 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative O.I. H.G. S.X.
0.47 62.3 0.98 Os02g0297600 AK122023.1 - Protein of unknown function DUF707 family protein 8e-20 At1g67850 unknown protein O.I. H.G. S.X.
0.47 62.3 0.98 Os07g0657200 AK072927.1 - WD40-like domain containing protein 3e-8 At3g63460 WD-40 repeat family protein O.I. H.G. S.X.
0.44 58.1 0.98 Os03g0804300 AK067295.1 - Huntingtin-interacting protein 14 6e-14 At3g60800 zinc finger (DHHC type) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.4 99.6 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
24.8 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.8 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.068 2 GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
0.056 1 GO:0015992 The directed movement of protons (hydrogen ions) into, out of, within or between cells.
0.056 2 GO:0015031 The directed movement of proteins into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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